View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3034_high_20 (Length: 304)
Name: NF3034_high_20
Description: NF3034
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3034_high_20 |
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Alignment Details
Target: chr8 (Bit Score: 259; Significance: 1e-144; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 1 - 291
Target Start/End: Original strand, 25948148 - 25948438
Alignment:
| Q |
1 |
tcatgaccattaggttctctggtacctgctaaacaatgtgatgttatcttacaagatattatagatgttgaaaatgatatttatttgataagaaattgta |
100 |
Q |
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| T |
25948148 |
tcatgaccattaggttctctggtacctgctaaacaatgtgatgttatcttacaagatattatatatgttgaaaatgatatttatttgataagaaattgta |
25948247 |
T |
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| Q |
101 |
tatttgttgcatgcaaaagaccactaatatctatattttattctagtactagactctattaaataaggaaatcatgagtatggtaacnnnnnnnncagaa |
200 |
Q |
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| T |
25948248 |
tatttgttgtatgcaaaagaccactaatatctatattttattctagtactagactctattaaataaggaaatcatgagtatggtaacaaaaaaaacagaa |
25948347 |
T |
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| Q |
201 |
aggatatcatagaattcaaagtaacatgaaaataaatcctgatatataattcgttatactcttcattactatatattacattcaaaatatt |
291 |
Q |
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| T |
25948348 |
aggatatcatagaattcaaagtaacatgaaaataaatcctgatatataattcgttatactcttcattactatatattacattcaaaatatt |
25948438 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 156; E-Value: 7e-83
Query Start/End: Original strand, 1 - 285
Target Start/End: Original strand, 25957511 - 25957795
Alignment:
| Q |
1 |
tcatgaccattaggttctctggtacctgctaaacaatgtgatgttatcttacaagatattatagatgttgaaaatgatatttatttgataagaaattgta |
100 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||| ||||| |||| ||||| ||||||||||||||||||||||||||| || |
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| T |
25957511 |
tcatgaccattagggtctctggtacctgctaaacaatgtgatgttatcttataagatgttattgatgtcgaaaatgatatttatttgataagaaatgata |
25957610 |
T |
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| Q |
101 |
tatttgttgcatgcaaaagaccactaatatctatattttattctagtactagactc--tattaaataaggaaatcatgagtatggtaacnnnnnnnncag |
198 |
Q |
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| T |
25957611 |
tatttgttgtatgcaaaagaccaataacatctatattttattcttgtacta-actctttattaaataaggaaatcatgagcatggtaaccaaaataacag |
25957709 |
T |
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| Q |
199 |
aaaggatatcatagaattcaaagtaacatgaaaataaatcctgatatataattcgttatactcttcattactatatattacattcaa |
285 |
Q |
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||||||||| ||| |||||||||||| |||||||| ||| |||| ||||||| | ||||||||| |||||||||||||||||||||| |
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| T |
25957710 |
aaaggatatgataaaattcaaagtaatatgaaaat-aattctgagatataatacattatactctgcattactatatattacattcaa |
25957795 |
T |
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