View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3034_high_22 (Length: 274)
Name: NF3034_high_22
Description: NF3034
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3034_high_22 |
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Alignment Details
Target: chr8 (Bit Score: 84; Significance: 6e-40; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 175 - 258
Target Start/End: Original strand, 38874178 - 38874261
Alignment:
| Q |
175 |
tgttgagcataacgtgcgccttctctgcttatcctacgcatcccgttcgaatctccattccaacaacatctaccattcgctatg |
258 |
Q |
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| T |
38874178 |
tgttgagcataacgtgcgccttctctgcttatcctacgcatcccgttcgaatctccattccaacaacatctaccattcgctatg |
38874261 |
T |
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Target: chr8; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 10 - 107
Target Start/End: Original strand, 38874014 - 38874108
Alignment:
| Q |
10 |
aagaatattcgaggaagggtggtaaaagaaaatcccnnnnnnngtataagattggatttattttattttaagtaatagtataatatgaagcataattg |
107 |
Q |
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| T |
38874014 |
aagaaaattcgaggaagggtggtaaaagaaaatcccaaaaaaagtataagattggatttattttattttaactaa---tataatgtgaagcataattg |
38874108 |
T |
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