View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3034_high_24 (Length: 254)
Name: NF3034_high_24
Description: NF3034
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3034_high_24 |
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Alignment Details
Target: chr8 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 4 - 236
Target Start/End: Original strand, 34222044 - 34222277
Alignment:
| Q |
4 |
ttttgatgcaacatggaaaattcaatacactcttctcttacaaacaacaatattatctattgtaatattagacccaataaacaacacaagttctaagcat |
103 |
Q |
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| T |
34222044 |
ttttgatgcaacatggaaaattcaatacactcttctcttacaaacaacaatattatctattgtaatagtagacccaataaacaacacaagttctaagcat |
34222143 |
T |
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| Q |
104 |
caagatgcttaaatggatcatg-nnnnnnnnncctttctataatgataacaataattacttgagaaaaacaataatagtaacgtgtaattaatttttgta |
202 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34222144 |
caagatgcttaaatggatcatgttttttttttcctttctataatgataacaataattacttgagaaaaacaataatagtaacgtgtaattaatttttgta |
34222243 |
T |
|
| Q |
203 |
tacacaaaatcacaaagagtatagcacactagcc |
236 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
34222244 |
cacacaaaatcacaaagagtatagcacactagcc |
34222277 |
T |
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