View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3034_high_28 (Length: 246)
Name: NF3034_high_28
Description: NF3034
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3034_high_28 |
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Alignment Details
Target: chr1 (Bit Score: 153; Significance: 3e-81; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 2 - 232
Target Start/End: Complemental strand, 33018631 - 33018402
Alignment:
| Q |
2 |
tgtagggcacgtagccatattatcagctagctcacactcatattgatttattcccgtacattttactctttgatttctaatgaaatgctataaagcagtt |
101 |
Q |
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| T |
33018631 |
tgtagggcacgtagccatattatcggctaactcacactcatattgatttatccccgtgcattttactctttgatttctaatgaaatgctataaagcagtt |
33018532 |
T |
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| Q |
102 |
ctactnnnnnnnntattgaatccagcacttccaaattaataattatatattcaattttttaacatatatgcttttcgccttgcggctcttgtaagcannn |
201 |
Q |
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| T |
33018531 |
ctagtaaaaaaaatattgaatccagcacttccaaaataatatttatatattcaattttttaacatatatgcttttcgccttgcggctcttgtaagca-tt |
33018433 |
T |
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| Q |
202 |
nnnnaaacctttaatacttaaagcagaatat |
232 |
Q |
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||||||||||||||||||||||||||| |
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| T |
33018432 |
ttttaaacctttaatacttaaagcagaatat |
33018402 |
T |
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