View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3034_high_30 (Length: 222)
Name: NF3034_high_30
Description: NF3034
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3034_high_30 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 10 - 204
Target Start/End: Original strand, 83449 - 83643
Alignment:
| Q |
10 |
agtgagatgaaaatccagggtggaaacacaatcaagcaataagatgttacaaacacatatgattggttgaaacatgatccaacttatccaagtggaaaat |
109 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
83449 |
agtgagataaaaatccagggtggaaacacaatcaagcaataagatgttacaaacacatatgattggttgaaacatgatccaacttatccaagtggaaaat |
83548 |
T |
|
| Q |
110 |
gttagataaggtaatgacttacaatcacacacagaacaatcatcatattcatatatcttaaaccttttcatccattacttgtttattgtcataaa |
204 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
83549 |
gttagataaggtaatgacttacaatcacacacagaacaatcatcatattcatatatcttaaaccttttcatccattacttgtttattgtcataaa |
83643 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 112 - 157
Target Start/End: Original strand, 40636450 - 40636495
Alignment:
| Q |
112 |
tagataaggtaatgacttacaatcacacacagaacaatcatcatat |
157 |
Q |
| |
|
||||||||||||| ||| ||||||||||||| |||||||||||||| |
|
|
| T |
40636450 |
tagataaggtaattactcacaatcacacacacaacaatcatcatat |
40636495 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University