View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3034_high_4 (Length: 629)
Name: NF3034_high_4
Description: NF3034
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3034_high_4 |
 | |
|
| [»] scaffold0536 (2 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 506; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 506; E-Value: 0
Query Start/End: Original strand, 18 - 574
Target Start/End: Complemental strand, 48911784 - 48911227
Alignment:
| Q |
18 |
aggaatttgtagcttgtttgcaagttcatgaacccaaggatacatgaaatcagcgacgatgcaatctggtgggtgctgctccacgaagtgttggatggtt |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48911784 |
aggaatttgtagcttgtttgcaagttcatgaacccaaggatacatgaaatcagccacgatgcaatctggtgggtgctgctccacgaagtgttggatggtt |
48911685 |
T |
|
| Q |
118 |
ggtcggagtagagtggctgctcgatagattttggtgaggttgtcgaggtcggtggtggtgaagaggggttcgacaccatcggggaggcctactgcttgtg |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
48911684 |
ggtcggagtagagtggctgctcgatagattttggtgaggttgtcgaggtcggtggtggtgaagaggggttcgacgccatcggggaggcctactgcttgtg |
48911585 |
T |
|
| Q |
218 |
aaggaaatggaacagtgtgaatacgaaggtgttggtttaaaggaatagatttgccaaggatttgagcattggagggtgtggttatgatggtgacattttg |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48911584 |
aaggaaatggaacagtgtgaatacgaaggtgttggtttaaaggaatagatttgccaaggatttgagcattggagggtgtggttatgatggtgacattttg |
48911485 |
T |
|
| Q |
318 |
acggcgtaaggcaaagagagttgctatgtcgcatagagggatcatgtggccaggtgctaagtaaggtatgaagtatatattaagtggtttctcttctcct |
417 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||| ||||||||||||| |
|
|
| T |
48911484 |
acggcgtaaggcaaagagagttgctatgtcgcatagagggatcatgtggccaggtgctaagtaaggtatgaagtagatggtaagtgctttctcttctcct |
48911385 |
T |
|
| Q |
418 |
tcttccgtattcatcatctttgccttgtcttctgtgtgtttggatactatatatgaattagaatgaacgtgatgatgagagaggtattgtactaattaat |
517 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
48911384 |
tcttccgtattcatcatctttgccttgtcttctgtgtgtttggatactatgaatgaattagaatgaacgtgatgatgagagaggtattgtagcaattaac |
48911285 |
T |
|
| Q |
518 |
tgtttctgctattgcttttaatgtccaacaatggaga-gatcctaactctggttgccc |
574 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
48911284 |
tgtttctgctattgcttttaatgtccaacaatggagaggatcctaactctggttgccc |
48911227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 217 - 374
Target Start/End: Original strand, 48975036 - 48975193
Alignment:
| Q |
217 |
gaaggaaatggaacagtgtgaatacgaaggtgttggtttaaaggaatagatttgccaaggatttgagcattggagggtgtggttatgatggtgacatttt |
316 |
Q |
| |
|
||||||||||||||||| |||| || ||||| | || |||| || |||||| || |||||| ||||| ||||| ||||| |||||||| |||| | |
|
|
| T |
48975036 |
gaaggaaatggaacagtatgaaggcggaggtggttgtgagaagggatggatttgagaatgatttgggcattagagggagtggtaatgatggtaacatggt |
48975135 |
T |
|
| Q |
317 |
gacggcgtaaggcaaagagagttgctatgtcgcatagagggatcatgtggccaggtgc |
374 |
Q |
| |
|
||| || | |||||||||| || || ||||||||||||||| |||||||||||||||| |
|
|
| T |
48975136 |
gaccgcatgaggcaaagagtgtagcaatgtcgcatagaggggtcatgtggccaggtgc |
48975193 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 263 - 392
Target Start/End: Original strand, 48952213 - 48952342
Alignment:
| Q |
263 |
tagatttgccaaggatttgagcattggagggtgtggttatgatggtgacattttgacggcgtaaggcaaagagagttgctatgtcgcatagagggatcat |
362 |
Q |
| |
|
|||||||| |||||||| |||||| || | ||||||||||| || ||| |||| ||| | |||||||||| |||||||| |||| ||||||||| |
|
|
| T |
48952213 |
tagatttgggaaggattttagcatttgaatgagtggttatgattgtaacaaagtgaccacgtgaagcaaagagagaagctatgtcacataaagggatcat |
48952312 |
T |
|
| Q |
363 |
gtggccaggtgctaagtaaggtatgaagta |
392 |
Q |
| |
|
||| || | ||||||||| || |||||||| |
|
|
| T |
48952313 |
gtgccctgctgctaagtatggaatgaagta |
48952342 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 64 - 104
Target Start/End: Original strand, 48952023 - 48952063
Alignment:
| Q |
64 |
aaatcagcgacgatgcaatctggtgggtgctgctccacgaa |
104 |
Q |
| |
|
||||| || ||||||||||| |||||||||||||||||||| |
|
|
| T |
48952023 |
aaatccgccacgatgcaatcaggtgggtgctgctccacgaa |
48952063 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0536 (Bit Score: 219; Significance: 1e-120; HSPs: 2)
Name: scaffold0536
Description:
Target: scaffold0536; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 18 - 432
Target Start/End: Complemental strand, 5950 - 5536
Alignment:
| Q |
18 |
aggaatttgtagcttgtttgcaagttcatgaacccaaggatacatgaaatcagcgacgatgcaatctggtgggtgctgctccacgaagtgttggatggtt |
117 |
Q |
| |
|
||||||||| ||||||||||||||||||| |||||||||| ||| |||||| || || |||||||| ||||||||||||||||||||||||||||||| | |
|
|
| T |
5950 |
aggaatttgaagcttgtttgcaagttcatcaacccaaggaaacaagaaatccgccacaatgcaatccggtgggtgctgctccacgaagtgttggatgggt |
5851 |
T |
|
| Q |
118 |
ggtcggagtagagtggctgctcgatagattttggtgaggttgtcgaggtcggtggtggtgaagaggggttcgacaccatcggggaggcctactgcttgtg |
217 |
Q |
| |
|
||| |||| ||||||| ||| || |||| ||| || || ||||||||||||| || | ||||| |||||| ||||| |||||||| ||| | || | |
|
|
| T |
5850 |
ggttggaggagagtggtggcttgaaagatcttgcgaagattctcgaggtcggtggcggcggagaggctttcgacgccatcagggaggccaacttcatggg |
5751 |
T |
|
| Q |
218 |
aaggaaatggaacagtgtgaatacgaaggtgttggtttaaaggaatagatttgccaaggatttgagcattggagggtgtggttatgatggtgacattttg |
317 |
Q |
| |
|
||||||||||||| ||||||||||| ||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| || ||||| |
|
|
| T |
5750 |
aaggaaatggaacggtgtgaatacggaggtgttggtttaaagggatggatttgccaaggatttgagcattggagggtgtggttatgatggtaactttttg |
5651 |
T |
|
| Q |
318 |
acggcgtaaggcaaagagagttgctatgtcgcatagagggatcatgtggccaggtgctaagtaaggtatgaagtatatattaagtggtttctcttctcct |
417 |
Q |
| |
|
|||||||||||||||||| ||||||||||| |||| ||||||||| || ||||| |||||||||||||||||||| ||| |||||| ||||||||||||| |
|
|
| T |
5650 |
acggcgtaaggcaaagagtgttgctatgtcacataaagggatcatatgaccaggagctaagtaaggtatgaagtagatagtaagtgctttctcttctcct |
5551 |
T |
|
| Q |
418 |
tcttccgtattcatc |
432 |
Q |
| |
|
|||||| ||| |||| |
|
|
| T |
5550 |
tcttccatatccatc |
5536 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0536; HSP #2
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 19 - 415
Target Start/End: Complemental strand, 9933 - 9553
Alignment:
| Q |
19 |
ggaatttgtagcttgtttgcaagttcatgaacccaaggatacatgaaatcagcgacgatgcaatctggtgggtgctgctccacgaagtgttggatggttg |
118 |
Q |
| |
|
|||||||| ||||||||||||||||||| |||||||||| ||| ||||| | ||||||||||| ||||||||||||||||||||||||||||||| || |
|
|
| T |
9933 |
ggaatttgaagcttgtttgcaagttcatcaacccaaggaaacaaaaaatctgtcacgatgcaatccggtgggtgctgctccacgaagtgttggatgggtg |
9834 |
T |
|
| Q |
119 |
gtcggagtagagtggctgctcgatagattttggtgaggttgtcgaggtcggtggtggtgaagaggggttcgacaccatcggggaggcctactgcttgtga |
218 |
Q |
| |
|
||||||| ||||||| ||| || |||||||| | ||| | || ||| |||| || |||| ||| ||||| ||||||||||||||| |||| || |
|
|
| T |
9833 |
gtcggaggagagtggtagcttgaaagattttgaccatgttattgaagtcagtggcggcagagagactttctacaccgtcggggaggcctacttcttggga |
9734 |
T |
|
| Q |
219 |
aggaaatggaacagtgtgaatacgaaggtgttggtttaaaggaatagatttgccaaggatttgagcattggagggtgtggttatgatggtgacattttga |
318 |
Q |
| |
|
|||||||||||||||||||||||| || |||||||||||||| ||||||||||||||||||||||| ||||| ||||||||||||||||| ||||||||| |
|
|
| T |
9733 |
aggaaatggaacagtgtgaatacggagatgttggtttaaagggatagatttgccaaggatttgagcgttggaaggtgtggttatgatggtaacattttga |
9634 |
T |
|
| Q |
319 |
cggcgtaaggcaaagagagttgctatgtcgcatagagggatcatgtggccaggtgctaagtaaggtatgaagtatatattaagtggtttctcttctc |
415 |
Q |
| |
|
| ||||| ||||||||||||||||||||| || ||||||| |||||||||||||||||| || ||||||| ||||||||||| |
|
|
| T |
9633 |
cagcgta----------------tatgtcgcatagagggatcatatgaccaggtgataagtaaggtatgaagtagattttaagtgctttctcttctc |
9553 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 486 - 542
Target Start/End: Original strand, 31742730 - 31742786
Alignment:
| Q |
486 |
gtgatgatgagagaggtattgtactaattaattgtttctgctattgcttttaatgtc |
542 |
Q |
| |
|
||||||||||||||| ||||||| |||||||| |||| ||||||||||||| |||| |
|
|
| T |
31742730 |
gtgatgatgagagagttattgtagcaattaattatttccgctattgcttttagtgtc |
31742786 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University