View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3034_high_7 (Length: 524)
Name: NF3034_high_7
Description: NF3034
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3034_high_7 |
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| [»] scaffold0280 (1 HSPs) |
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| [»] scaffold0003 (1 HSPs) |
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| [»] scaffold0018 (1 HSPs) |
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Alignment Details
Target: scaffold0280 (Bit Score: 426; Significance: 0; HSPs: 1)
Name: scaffold0280
Description:
Target: scaffold0280; HSP #1
Raw Score: 426; E-Value: 0
Query Start/End: Original strand, 19 - 515
Target Start/End: Complemental strand, 7323 - 6827
Alignment:
| Q |
19 |
atagaccacaatattta-gtttaaaagagattgtagtttgcttccctcttttgacaatcatcacataatttgttgtttacaaactttattttacgtaatc |
117 |
Q |
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||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
7323 |
atagaccacaatatttaagtttaaaagagattg-agtttgcttccctcttttgacaatcatcacataatttattgtttacaaactttattttacgtaatc |
7225 |
T |
|
| Q |
118 |
tgactactagatccttggacataattctatttcgtaagtcaaaatgaatgtgaccaagatgtttatgccataacccatagtcctcactcttggcaacaaa |
217 |
Q |
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|| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
7224 |
tggctactagatccttggacataactctatttcgtaagtcaaaatgaatgtgaccaagatgtttatgccataacccataatcctcactcttggcaacaaa |
7125 |
T |
|
| Q |
218 |
acacttaacactgcttaatgacacatcatatagatcaagcatatacacannnnnnnnactcttacacccttaagcacaactttcgtatctgtatcatgct |
317 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7124 |
acacttaacactacttaatgacacatcatatagatcaagcatatacacgttttttttactcttacacccttaagcacaactttcgtatctgtatcatgct |
7025 |
T |
|
| Q |
318 |
caacaatgcaaccttggatattaaaagttatagtgtaccctttctcgcaaaattgacttacacttaagtggtagtgcttcagctcttcaacaagtattac |
417 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7024 |
caacaatgcaaccttggatattaaaagttatagtgtaccctttgtcgtaaaattgacttacacttaagtggtagtgcttcagctcttcaacaagtattac |
6925 |
T |
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| Q |
418 |
atctttgatagttgttgtaaagggatttcccccaactcctttaccttgataccttgattattgtcgtcataagaggcaaatccacgctcgtttcattt |
515 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6924 |
atctttgatagttgttgtaaagggatttcccccaactcctttaccttgataccttgattattgtcgtcataagaggcaaatccacgctcgtttcattt |
6827 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 71; Significance: 6e-32; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 66 - 455
Target Start/End: Original strand, 355263 - 355652
Alignment:
| Q |
66 |
ttttgacaatcatcacataatttgttgtttacaaactttattttacgtaatctgactactagatccttggacataattctatttcgtaagtcaaaatgaa |
165 |
Q |
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||||||| | |||| |||||||| | |||||||| ||| ||| |||| | |||||| | ||||||| |||||| | ||||| |||||| ||| |||| |
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| T |
355263 |
ttttgacgagcatcgcataatttttcttttacaaattttgtttcgggtaaaccgactaccacatccttgaacataactatatttagtaagtaaaagtgaa |
355362 |
T |
|
| Q |
166 |
tgtgaccaagatgtttatgccataacccatagtcctcactctt-ggcaacaaaacacttaa-cactgcttaatgacacatcatatagatcaagcatatac |
263 |
Q |
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|| ||||| ||||||| ||||||| | |||| |||||||| |||||||| |||||| ||| |||||||||||||||| ||||||||||||||| |
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| T |
355363 |
catggtcaagacgtttatgtcataaccaaaagtcttcactctttggcaacaagacactttggcaccacttaatgacacatcatctagatcaagcatatag |
355462 |
T |
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| Q |
264 |
acannnnnnnnactcttacacccttaagcacaactttcgtatctgtatcatgctcaacaatgcaaccttggatattaaaagttatagtgtaccctttctc |
363 |
Q |
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||| |||||||||||||||| || || || | |||||| || ||||||| ||||||||||||| |||| ||||||||||||||||| || || |
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| T |
355463 |
acattttat--actcttacacccttaaacaaaatttccttatctgcattgtgctcaataatgcaaccttgggtattgaaagttatagtgtacccattgtc |
355560 |
T |
|
| Q |
364 |
gcaaaattgacttacacttaagtggtagtgcttcagctcttcaacaagtattacatctttgatagttgttgtaaagggatttcccccaactc |
455 |
Q |
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|||||||| ||| ||||||| | | ||||| ||| |||||||| | || ||||||| |||||| |||| |||||||||||| ||||| |
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| T |
355561 |
ataaaattgatttatacttaagagattgtgctaaagcccttcaacaggcatagcatctttaatagttattgtggagggatttccccaaactc |
355652 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 61; Significance: 6e-26; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 41 - 262
Target Start/End: Complemental strand, 18914833 - 18914611
Alignment:
| Q |
41 |
aaagagattgtagtttgcttccctcttttgacaatcatcacataatttgt--tgtttacaaactttattttacgtaatctgactactagatccttggaca |
138 |
Q |
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||||||| | || |||||||||| |||||||||| ||||||||||||||| | |||| ||||||||||||| |||| || |||||||||| |||||| |
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| T |
18914833 |
aaagagactctactttgcttccc-cttttgacaagcatcacataatttgtcttctttaaaaactttattttaggtaaagtggatactagatccatggaca |
18914735 |
T |
|
| Q |
139 |
taattctatttcgtaagtcaaaatgaatgtgaccaagatgtttatgccataacccatagtcctcactcttggcaacaaaacacttaacactgcttaatga |
238 |
Q |
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||| | ||||| |||||||||| ||||||||||| ||| | |||| ||||||| | | | |||||||||||||||| ||||| ||| |||||||| |
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| T |
18914734 |
taactgtattttgtaagtcaaagtgaatgtgaccgagacatatatgtcataaccaagaaccttcactcttggcaacaaggcacttgtcaccacttaatga |
18914635 |
T |
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| Q |
239 |
cacatcatatagatcaagcatata |
262 |
Q |
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| ||||| || |||||||||||| |
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| T |
18914634 |
cgaatcatctaaatcaagcatata |
18914611 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 36 - 138
Target Start/End: Complemental strand, 19776567 - 19776466
Alignment:
| Q |
36 |
gtttaaaagagattgtagtttgcttccctcttttgacaatcatcacataatttgttgtttacaaactttattttacgtaatctgactactagatccttgg |
135 |
Q |
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|||||||||| | | ||||||||||||| |||||||||| ||||||||||||||| ||| |||| ||||||||| |||| |||| ||||||| |||| |
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| T |
19776567 |
gtttaaaagacactctagtttgcttccc-cttttgacaagcatcacataatttgtccttttcaaattttattttaggtaaactgaaaactagatatttgg |
19776469 |
T |
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| Q |
136 |
aca |
138 |
Q |
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||| |
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| T |
19776468 |
aca |
19776466 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 36 - 115
Target Start/End: Complemental strand, 19776735 - 19776657
Alignment:
| Q |
36 |
gtttaaaagagattgtagtttgcttccctcttttgacaatcatcacataatttgttgtttacaaactttattttacgtaa |
115 |
Q |
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|||||||||| | | ||||||||||||| |||||||||| |||||||||||||| ||| |||| ||||||||| |||| |
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| T |
19776735 |
gtttaaaagacactctagtttgcttccc-cttttgacaagtatcacataatttgtctttttcaaattttattttaggtaa |
19776657 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 51 - 138
Target Start/End: Original strand, 14975042 - 14975128
Alignment:
| Q |
51 |
tagtttgcttccctcttttgacaatcatcacataatttgttgtttacaaactttattttacgtaatctgactactagatccttggaca |
138 |
Q |
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|||||||||| || |||||||||| ||||||||||||||| ||| |||| ||||||||| |||| || | ||||||| |||||||| |
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| T |
14975042 |
tagtttgcttgcc-cttttgacaagcatcacataatttgtccttttcaaattttattttaggtaaactaataactagatgcttggaca |
14975128 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 51 - 138
Target Start/End: Original strand, 15404518 - 15404604
Alignment:
| Q |
51 |
tagtttgcttccctcttttgacaatcatcacataatttgttgtttacaaactttattttacgtaatctgactactagatccttggaca |
138 |
Q |
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| T |
15404518 |
tagtttgcttgcc-cttttgacaagcatcacataatttgtccttttcaaattttattttaggtaaactaataactagatgcttggaca |
15404604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0018 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0018
Description:
Target: scaffold0018; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 36 - 138
Target Start/End: Original strand, 62691 - 62792
Alignment:
| Q |
36 |
gtttaaaagagattgtagtttgcttccctcttttgacaatcatcacataatttgttgtttacaaactttattttacgtaatctgactactagatccttgg |
135 |
Q |
| |
|
|||||||||||| | |||||| |||||| |||||||||| ||||| || |||||| ||| |||| ||||||||| |||| | | ||||||||||||| |
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| T |
62691 |
gtttaaaagagactttagttttcttccc-cttttgacaagcatcatattatttgtctttttcaaattttattttaggtaacccaatgactagatccttgg |
62789 |
T |
|
| Q |
136 |
aca |
138 |
Q |
| |
|
||| |
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|
| T |
62790 |
aca |
62792 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 51 - 135
Target Start/End: Original strand, 18580952 - 18581035
Alignment:
| Q |
51 |
tagtttgcttccctcttttgacaatcatcacataatttgttgtttacaaactttattttacgtaatctgactactagatccttgg |
135 |
Q |
| |
|
||||||||||||| |||||||||| |||||||||||| | ||| ||||||| |||||| |||| | | |||||||||||||| |
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| T |
18580952 |
tagtttgcttccc-cttttgacaagtatcacataatttatctttttcaaacttcattttaggtaaacctattactagatccttgg |
18581035 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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