View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3034_high_9 (Length: 498)
Name: NF3034_high_9
Description: NF3034
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3034_high_9 |
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Alignment Details
Target: chr8 (Bit Score: 464; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 464; E-Value: 0
Query Start/End: Original strand, 1 - 488
Target Start/End: Original strand, 25947681 - 25948168
Alignment:
| Q |
1 |
gacagtattgggtaattcttgtaaacctgtttcataaagagacaattcttgcaaagcacatagttttccaatgcagtttggtagtcttctcaaatgtgag |
100 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
25947681 |
gacagtgttgggtaattcttgtaaacctgtttcataaagagataattcttgcaaagcacatagttttccaatgcagtctggtagtcttctcaaatgtgag |
25947780 |
T |
|
| Q |
101 |
caacgatctaaaacaagtcgttcaagtttggtcaagcgaaaaatggactcgggcaattttactatggcagttttatcagcagcaagtgttttcagtgatt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
25947781 |
caacgatctaaaacaagtcgttcaagtttggtcaagcgaaaaatggactcgggcaactttactatggcagttttatcagcagcaagggttttcagtgatt |
25947880 |
T |
|
| Q |
201 |
taagcatgcctatgttttctggtaatgcttttaacttggagcattcagaaagaatgaggctctccagatgtttcagtccagatacatcactaggaagttc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25947881 |
taagcatgcctatgttttctggtaatgcttttaacttggagcattcagaaagaatgaggctctccagatgtttcagtccagatacatcactaggaagttc |
25947980 |
T |
|
| Q |
301 |
aatgaagttttcacaacgtgtcaaattcaaattacgcaaagtagttaaactgccaatggattcatgaatccttgttagattaatgcagttcgccaaatta |
400 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25947981 |
aatcaagttttcacaacgtgtcaaattcaaattacgcaaagtagttaaactgccaatggattcatgaatccttgttagattaatgcagttcgccaaatta |
25948080 |
T |
|
| Q |
401 |
attttttctaggccgagacaccaagataaatcagggattgcagcaagttggtagcagttggagaggttcatgaccattaggttctctg |
488 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25948081 |
attttttctaggccgagacaccaagataaatcagggattgcagcaagttggtagcagttggagaggttcatgaccattaggttctctg |
25948168 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 1 - 488
Target Start/End: Original strand, 25957044 - 25957531
Alignment:
| Q |
1 |
gacagtattgggtaattcttgtaaacctgtttcataaagagacaattcttgcaaagcacatagttttccaatgcagtttggtagtcttctcaaatgtgag |
100 |
Q |
| |
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|||||| ||| |||||||||||||||||| | || |||||| ||||| |||||| |||||||||||||||||||||||||||||||||||||| | || |
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| T |
25957044 |
gacagtgttgtgtaattcttgtaaacctgaatgattaagagataattccagcaaagaacatagttttccaatgcagtttggtagtcttctcaaatataag |
25957143 |
T |
|
| Q |
101 |
caacgatctaaaacaagtcgttcaagtttggtcaagcgaaaaatggactcgggcaattttactatggcagttttatcagcagcaagtgttttcagtgatt |
200 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25957144 |
caactatctaaaacaagtcgttcaagtttggtcaagcgaaaaatggactccggcaattttactatggcagttttatcagcagcaagtgttttcagtgatt |
25957243 |
T |
|
| Q |
201 |
taagcatgcctatgttttctggtaatgcttttaacttggagcattcagaaagaatgaggctctccagatgtttcagtccagatacatcactaggaagttc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25957244 |
taagcatgcctatgttttctggtaatgcttttaacttggagcattcagaaagaatgaggctctccagatgtttcagtccagatacatcactaggaagttc |
25957343 |
T |
|
| Q |
301 |
aatgaagttttcacaacgtgtcaaattcaaattacgcaaagtagttaaactgccaatggattcatgaatccttgttagattaatgcagttcgccaaatta |
400 |
Q |
| |
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||| |||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
25957344 |
aatcaagttttcacaacgtgtcaaattcaaattaagcaatgtagttaaactgccaatggattcatgaatccttgttagattaatgcagttcaccaaatta |
25957443 |
T |
|
| Q |
401 |
attttttctaggccgagacaccaagataaatcagggattgcagcaagttggtagcagttggagaggttcatgaccattaggttctctg |
488 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||| |
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| T |
25957444 |
attttttctaggccgagacaccaagataaatcagggattgcagcaagttggtagcagtcggagaggttcatgaccattagggtctctg |
25957531 |
T |
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