View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3034_low_15 (Length: 407)
Name: NF3034_low_15
Description: NF3034
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3034_low_15 |
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Alignment Details
Target: chr4 (Bit Score: 327; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 44 - 391
Target Start/End: Complemental strand, 33500166 - 33499819
Alignment:
| Q |
44 |
ttgaagatgttgaagtgtgttggggagttagaggatctccaaatatcattgttgtctattagctaacttagccaagtgatttgcaatgaaatatccaaca |
143 |
Q |
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| T |
33500166 |
ttgaagatgttgaagtgtgttggggagttagaggatctccaaatatcattgttgtctattagctaacttagccaagtgatttgcaatgaaatatccaaca |
33500067 |
T |
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| Q |
144 |
aattaaagaatttctttattattaaaagaatgcttaagcttggaattatcactcacaaccaaacacaatgataacataattcagtaagcnnnnnnntgtg |
243 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
33500066 |
aattaaagaatttctttattattaaaagaatgcttaagcttggaattatcactcacaaccaaacacaatgataacataattcagtaagcaaaaaaatgtg |
33499967 |
T |
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| Q |
244 |
cgcaagtcttcagtctttagcctgagcagatgttccatcaaagtcaacaagaccaaatcatcaatcgatggacgataaaaatgttttgaagttgttattt |
343 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33499966 |
cgcaagtcttcagtctttagcctgagcagatgttccatcaaagtcaacaagaccaaatcatcaatcgatggacgataaaaatgttttgaagttgttattt |
33499867 |
T |
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| Q |
344 |
ttgggaagtttgtaaatagcgtcaggatgtaggaaacactcaagaaat |
391 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33499866 |
ttgggaagtttgtaaatagcgtcaggatgtaggaaacactcaagaaat |
33499819 |
T |
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