View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3034_low_17 (Length: 369)

Name: NF3034_low_17
Description: NF3034
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3034_low_17
NF3034_low_17
[»] chr3 (4 HSPs)
chr3 (1-353)||(41199503-41199860)
chr3 (280-353)||(38239644-38239717)
chr3 (282-353)||(54846120-54846191)
chr3 (265-306)||(35077661-35077702)
[»] chr4 (4 HSPs)
chr4 (272-353)||(6017259-6017340)
chr4 (271-353)||(15034362-15034444)
chr4 (284-353)||(31928896-31928965)
chr4 (318-352)||(41955437-41955471)
[»] chr6 (2 HSPs)
chr6 (283-353)||(5582626-5582696)
chr6 (266-306)||(339527-339567)
[»] chr2 (6 HSPs)
chr2 (271-353)||(34756894-34756976)
chr2 (271-353)||(15429381-15429463)
chr2 (301-353)||(28816846-28816898)
chr2 (282-349)||(43927349-43927414)
chr2 (283-353)||(42152431-42152501)
chr2 (271-306)||(26655690-26655725)
[»] chr8 (3 HSPs)
chr8 (266-353)||(8968522-8968609)
chr8 (274-350)||(12478296-12478371)
chr8 (266-353)||(21137885-21137972)
[»] chr1 (6 HSPs)
chr1 (271-353)||(26686313-26686395)
chr1 (283-346)||(11647312-11647375)
chr1 (283-353)||(42817737-42817807)
chr1 (271-353)||(33169170-33169251)
chr1 (274-340)||(37575116-37575182)
chr1 (292-336)||(16640194-16640238)
[»] chr5 (6 HSPs)
chr5 (282-353)||(7159440-7159511)
chr5 (283-353)||(13695225-13695295)
chr5 (271-353)||(39605706-39605787)
chr5 (264-306)||(15675501-15675543)
chr5 (266-306)||(1672374-1672414)
chr5 (266-306)||(7161971-7162011)
[»] scaffold0108 (1 HSPs)
scaffold0108 (283-353)||(20861-20931)
[»] chr7 (1 HSPs)
chr7 (263-306)||(19400259-19400302)


Alignment Details
Target: chr3 (Bit Score: 219; Significance: 1e-120; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 353
Target Start/End: Original strand, 41199503 - 41199860
Alignment:
Q  1 gctatcccaattttgtttaaagaaa---catgagcaattcactgttttcatgagtattacttagttggtagagatgtcacnnnnnnnnnnnn----gggg 93  Q
    |||||||||||||||||||||||||   |||||||||| |||||||||||||||||||||||||||||||||||||||||                ||||    
T  41199503 gctatcccaattttgtttaaagaaataacatgagcaatccactgttttcatgagtattacttagttggtagagatgtcactatatatatatatatagggg 41199602  T
Q  94 tcaaggttcaaactctgtatttcaacatatttttcatggtgactttttagtcattaagcaacttgaaagaagaaaaaagaaacaaacgtgagcaaatcac 193  Q
    | ||||||| |||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     ||||    
T  41199603 ttaaggttcgaactctatatttcaacatatttatcatggtgactttttagtcattaagcaacttgaaagaagaaaaaagaaacaaacgtgac----tcac 41199698  T
Q  194 tttataatataaagtagataatatcaatcattaaataacaaatcatacatatacatcataggtacattgaagccagcggcggagctaaaaattttataga 293  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||| |||||||| ||||| ||||||||    
T  41199699 tatataatataaagtagataatatcaatcattaaataacaaatcatacatgtacatcataggtacattgtagccagtggcggagccaaaaaatttataga 41199798  T
Q  294 gcctgggcaaaaattgcatatttcatgcgg--ataattttatagacttcccatataatgtta 353  Q
    ||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||    
T  41199799 gcctgggcaaaaattgcatatttcatgcggatataattttatagacttcccatataatgtta 41199860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 280 - 353
Target Start/End: Complemental strand, 38239717 - 38239644
Alignment:
Q  280 aaaaattttatagagcctgggcaaaaattgcatatttcatgcggataattttatagacttcccatataatgtta 353  Q
    ||||||||||||||||||||| ||||||| || ||||  || ||||||||||||||||||| || |||||||||    
T  38239717 aaaaattttatagagcctgggtaaaaattacacattttttgtggataattttatagacttctcacataatgtta 38239644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 282 - 353
Target Start/End: Complemental strand, 54846191 - 54846120
Alignment:
Q  282 aaattttatagagcctgggcaaaaattgcatatttcatgcggataattttatagacttcccatataatgtta 353  Q
    |||||||||||||  | || |||||||||||||||  ||||||||||||||||||||| | |||||||||||    
T  54846191 aaattttatagagtttaggtaaaaattgcatattttctgcggataattttatagactttctatataatgtta 54846120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 265 - 306
Target Start/End: Complemental strand, 35077702 - 35077661
Alignment:
Q  265 gccagcggcggagctaaaaattttatagagcctgggcaaaaa 306  Q
    ||||| ||||||| || |||||||||||||||||||||||||    
T  35077702 gccagtggcggagttagaaattttatagagcctgggcaaaaa 35077661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 62; Significance: 1e-26; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 272 - 353
Target Start/End: Complemental strand, 6017340 - 6017259
Alignment:
Q  272 gcggagctaaaaattttatagagcctgggcaaaaattgcatatttcatgcggataattttatagacttcccatataatgtta 353  Q
    ||||||| | |||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||| |||||||||||||    
T  6017340 gcggagccagaaattttatagagcctgggcaaaaattgcacatttcctgcggataattttatagactttccatataatgtta 6017259  T

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Target: chr4; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 271 - 353
Target Start/End: Original strand, 15034362 - 15034444
Alignment:
Q  271 ggcggagctaaaaattttatagagcctgggcaaaaattgcatatttcatgcggataattttatagacttcccatataatgtta 353  Q
    |||||||| | ||||| |||||||||||||||||||||||| ||||  |||||| ||||| ||||||||||||| ||||||||    
T  15034362 ggcggagccagaaattatatagagcctgggcaaaaattgcacattttttgcggaaaatttgatagacttcccatgtaatgtta 15034444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 284 - 353
Target Start/End: Original strand, 31928896 - 31928965
Alignment:
Q  284 attttatagagcctgggcaaaaattgcatatttcatgcggataattttatagacttcccatataatgtta 353  Q
    |||||| ||||||||| ||||||||||| |||||||||| ||||||||||| |||||||||| |||||||    
T  31928896 attttacagagcctggacaaaaattgcacatttcatgcgaataattttatatacttcccatacaatgtta 31928965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 318 - 352
Target Start/End: Complemental strand, 41955471 - 41955437
Alignment:
Q  318 atgcggataattttatagacttcccatataatgtt 352  Q
    ||||||||||||||||||||||| |||||||||||    
T  41955471 atgcggataattttatagacttctcatataatgtt 41955437  T

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Target: chr6 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 283 - 353
Target Start/End: Complemental strand, 5582696 - 5582626
Alignment:
Q  283 aattttatagagcctgggcaaaaattgcatatttcatgcggataattttatagacttcccatataatgtta 353  Q
    ||||||||||||||||||||||||||||| |||| |||| |||||||||| ||||||||||||||||||||    
T  5582696 aattttatagagcctgggcaaaaattgcacattttatgcagataattttacagacttcccatataatgtta 5582626  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 266 - 306
Target Start/End: Complemental strand, 339567 - 339527
Alignment:
Q  266 ccagcggcggagctaaaaattttatagagcctgggcaaaaa 306  Q
    |||| |||||||||| |||||||||||||| ||||||||||    
T  339567 ccagtggcggagctagaaattttatagagcttgggcaaaaa 339527  T

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Target: chr2 (Bit Score: 55; Significance: 2e-22; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 271 - 353
Target Start/End: Complemental strand, 34756976 - 34756894
Alignment:
Q  271 ggcggagctaaaaattttatagagcctgggcaaaaattgcatatttcatgcggataattttatagacttcccatataatgtta 353  Q
    |||||||| || ||||||||||||||||||||||||||||| ||||| | | ||||||||||||||||||| |||||||||||    
T  34756976 ggcggagccaagaattttatagagcctgggcaaaaattgcacatttcctaccgataattttatagacttcctatataatgtta 34756894  T

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Target: chr2; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 271 - 353
Target Start/End: Complemental strand, 15429463 - 15429381
Alignment:
Q  271 ggcggagctaaaaattttatagagcctgggcaaaaattgcatatttcatgcggataattttatagacttcccatataatgtta 353  Q
    |||||||| || ||||||||||||| ||| ||||||||||| ||||  ||||||||||||||||||||||| |||||||||||    
T  15429463 ggcggagccaagaattttatagagcttggacaaaaattgcacattttctgcggataattttatagacttcctatataatgtta 15429381  T

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Target: chr2; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 301 - 353
Target Start/End: Complemental strand, 28816898 - 28816846
Alignment:
Q  301 caaaaattgcatatttcatgcggataattttatagacttcccatataatgtta 353  Q
    ||||||||||| ||||| |||||||||||||||||||||||||||||||||||    
T  28816898 caaaaattgcacatttcttgcggataattttatagacttcccatataatgtta 28816846  T

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Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 282 - 349
Target Start/End: Complemental strand, 43927414 - 43927349
Alignment:
Q  282 aaattttatagagcctgggcaaaaattgcatatttcatgcggataattttatagacttcccatataat 349  Q
    ||||||||||||| |||   |||||||||||||||  |||||||||||||||| ||||||||||||||    
T  43927414 aaattttatagagtctgt--aaaaattgcatattttttgcggataattttataaacttcccatataat 43927349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 283 - 353
Target Start/End: Original strand, 42152431 - 42152501
Alignment:
Q  283 aattttatagagcctgggcaaaaattgcatatttcatgcggataattttatagacttcccatataatgtta 353  Q
    |||||||||||| ||| | |||||||| |||||| ||| || |  ||||||||||||||||||||||||||    
T  42152431 aattttatagagtctgagtaaaaattgtatattttatgtgggtggttttatagacttcccatataatgtta 42152501  T

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Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 271 - 306
Target Start/End: Original strand, 26655690 - 26655725
Alignment:
Q  271 ggcggagctaaaaattttatagagcctgggcaaaaa 306  Q
    |||||||| |||||||||||||||||||||||||||    
T  26655690 ggcggagccaaaaattttatagagcctgggcaaaaa 26655725  T

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Target: chr8 (Bit Score: 52; Significance: 1e-20; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 266 - 353
Target Start/End: Complemental strand, 8968609 - 8968522
Alignment:
Q  266 ccagcggcggagctaaaaattttatagagcctgggcaaaaattgcatatttcatgcggataattttatagacttcccatataatgtta 353  Q
    |||| ||||||||||  ||||||||||||||| ||||||||||||| ||||| ||| ||||||||| ||||||||| |||||||||||    
T  8968609 ccagtggcggagctaggaattttatagagcctaggcaaaaattgcacatttcctgctgataattttgtagacttcctatataatgtta 8968522  T

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Target: chr8; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 274 - 350
Target Start/End: Complemental strand, 12478371 - 12478296
Alignment:
Q  274 ggagctaaaaattttatagagcctgggcaaaaattgcatatttcatgcggataattttatagacttcccatataatg 350  Q
    |||||||  |||||||||||||||| |||||| ||||| ||||| ||| ||||||||||||||||||||||||||||    
T  12478371 ggagctaggaattttatagagcctgcgcaaaa-ttgcacatttcctgcagataattttatagacttcccatataatg 12478296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 266 - 353
Target Start/End: Original strand, 21137885 - 21137972
Alignment:
Q  266 ccagcggcggagctaaaaattttatagagcctgggcaaaaattgcatatttcatgcggataattttatagacttcccatataatgtta 353  Q
    |||| |||||||| |  |||||||||||| || || |||||||||| ||||  ||| ||||| |||||||||||||||||||||||||    
T  21137885 ccagtggcggagccatgaattttatagagtctaggtaaaaattgcacattttctgcagataactttatagacttcccatataatgtta 21137972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 51; Significance: 4e-20; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 271 - 353
Target Start/End: Original strand, 26686313 - 26686395
Alignment:
Q  271 ggcggagctaaaaattttatagagcctgggcaaaaattgcatatttcatgcggataattttatagacttcccatataatgtta 353  Q
    |||||||| || |||| |||||| | |||||||||| |||| |||| ||||||||||||||||||||||||||||||||||||    
T  26686313 ggcggagccaagaattctatagaacttgggcaaaaagtgcacattttatgcggataattttatagacttcccatataatgtta 26686395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 283 - 346
Target Start/End: Complemental strand, 11647375 - 11647312
Alignment:
Q  283 aattttatagagcctgggcaaaaattgcatatttcatgcggataattttatagacttcccatat 346  Q
    ||||||||||||||||||||||||||||| ||||  |||||||||||||| |||||||||||||    
T  11647375 aattttatagagcctgggcaaaaattgcacattttctgcggataattttaaagacttcccatat 11647312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 283 - 353
Target Start/End: Complemental strand, 42817807 - 42817737
Alignment:
Q  283 aattttatagagcctgggcaaaaattgcatatttcatgcggataattttatagacttcccatataatgtta 353  Q
    |||||||||||| |||||||||||||||| ||||  | |||||||||||||| |||| |||||||||||||    
T  42817807 aattttatagagtctgggcaaaaattgcacattttctacggataattttataaactttccatataatgtta 42817737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 271 - 353
Target Start/End: Original strand, 33169170 - 33169251
Alignment:
Q  271 ggcggagctaaaaattttatagagcctgggcaaaaattgcatatttcatgcggataattttatagacttcccatataatgtta 353  Q
    |||||||| | |||||||| |||| |||| ||||||||||| ||||| | ||||||||||||||||||| || ||||||||||    
T  33169170 ggcggagccagaaattttaaagagtctggacaaaaattgcacatttccttcggataattttatagactttcc-tataatgtta 33169251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 274 - 340
Target Start/End: Complemental strand, 37575182 - 37575116
Alignment:
Q  274 ggagctaaaaattttatagagcctgggcaaaaattgcatatttcatgcggataattttatagacttc 340  Q
    |||||||  ||||||||||||| ||| ||||||||||| ||||| |||| |||||||||||||||||    
T  37575182 ggagctaggaattttatagagcttggacaaaaattgcacatttcctgcgtataattttatagacttc 37575116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 292 - 336
Target Start/End: Original strand, 16640194 - 16640238
Alignment:
Q  292 gagcctgggcaaaaattgcatatttcatgcggataattttataga 336  Q
    |||||||||||||||||||| ||||  ||||||||||||||||||    
T  16640194 gagcctgggcaaaaattgcacattttctgcggataattttataga 16640238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 6e-16; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 282 - 353
Target Start/End: Original strand, 7159440 - 7159511
Alignment:
Q  282 aaattttatagagcctgggcaaaaattgcatatttcatgcggataattttatagacttcccatataatgtta 353  Q
    |||||||||||||  |||||||| ||||||| |||| ||||||||||||||||||||||  |||||||||||    
T  7159440 aaattttatagagtttgggcaaagattgcatgtttcctgcggataattttatagacttcttatataatgtta 7159511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 283 - 353
Target Start/End: Complemental strand, 13695295 - 13695225
Alignment:
Q  283 aattttatagagcctgggcaaaaattgcatatttcatgcggataattttatagacttcccatataatgtta 353  Q
    |||||| |||||||| || |||||||||| ||||| ||| |||||||||||||||||||| ||||||||||    
T  13695295 aattttgtagagcctaggaaaaaattgcacatttcctgcagataattttatagacttcccgtataatgtta 13695225  T

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Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 271 - 353
Target Start/End: Original strand, 39605706 - 39605787
Alignment:
Q  271 ggcggagctaaaaattttatagagcctgggcaaaaattgcatatttcatgcggataattttatagacttcccatataatgtta 353  Q
    |||||||| | |||||||||| ||| | ||||||||||||||||||  | |  ||||||||||||||||||||||||||||||    
T  39605706 ggcggagccagaaattttataaagc-taggcaaaaattgcatattttctacaaataattttatagacttcccatataatgtta 39605787  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 264 - 306
Target Start/End: Complemental strand, 15675543 - 15675501
Alignment:
Q  264 agccagcggcggagctaaaaattttatagagcctgggcaaaaa 306  Q
    |||||| ||||||||||  ||||||||||||||||||||||||    
T  15675543 agccagtggcggagctaggaattttatagagcctgggcaaaaa 15675501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 266 - 306
Target Start/End: Original strand, 1672374 - 1672414
Alignment:
Q  266 ccagcggcggagctaaaaattttatagagcctgggcaaaaa 306  Q
    |||| |||||||| | |||||||||||||||||||||||||    
T  1672374 ccagtggcggagccagaaattttatagagcctgggcaaaaa 1672414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 266 - 306
Target Start/End: Original strand, 7161971 - 7162011
Alignment:
Q  266 ccagcggcggagctaaaaattttatagagcctgggcaaaaa 306  Q
    |||| |||||||| | |||||||||||||||||||||||||    
T  7161971 ccagtggcggagccagaaattttatagagcctgggcaaaaa 7162011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0108 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0108
Description:

Target: scaffold0108; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 283 - 353
Target Start/End: Original strand, 20861 - 20931
Alignment:
Q  283 aattttatagagcctgggcaaaaattgcatatttcatgcggataattttatagacttcccatataatgtta 353  Q
    |||| |||||||  |||| |||||||||| ||||| | ||||||||||||||||||||| |||||||||||    
T  20861 aattatatagagtatgggtaaaaattgcacatttcctacggataattttatagacttcctatataatgtta 20931  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 263 - 306
Target Start/End: Complemental strand, 19400302 - 19400259
Alignment:
Q  263 aagccagcggcggagctaaaaattttatagagcctgggcaaaaa 306  Q
    ||||||| |||||||| | |||||||||||||||||||||||||    
T  19400302 aagccagtggcggagccagaaattttatagagcctgggcaaaaa 19400259  T

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