View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3034_low_2 (Length: 795)

Name: NF3034_low_2
Description: NF3034
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3034_low_2
NF3034_low_2
[»] chr1 (2 HSPs)
chr1 (155-777)||(50202032-50202638)
chr1 (1-142)||(50202761-50202921)


Alignment Details
Target: chr1 (Bit Score: 506; Significance: 0; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 506; E-Value: 0
Query Start/End: Original strand, 155 - 777
Target Start/End: Complemental strand, 50202638 - 50202032
Alignment:
Q  155 ttcaccttatactagttgaatacctacgatttacgttgctcttaaccaaagcaacattgaaatttgaagcttcatattcttattctcaaagtctaataaa 254  Q
    |||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50202638 ttcaacttatactagttgaatacctacgatttacgttgctcttacccaaagcaacattgaaatttgaagcttcatattcttattctcaaagtctaataaa 50202539  T
Q  255 agcagcctccagaggagaaagaacaaagtggattattttcaatgacagtgataaatgaacaccccacttccactttttgtactctccgtgacatctagtt 354  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  50202538 agcagcctccagaggagaaagaacaaagtggattattttcaatgacagtgataaatgaacaccccacttccactttttgtactctcggtgacatctagtt 50202439  T
Q  355 aaccacgatcaaagatggataatttaatttacgatcaaatttacggttagttcaatagcgtgagttagccacaatacatgaattaaattaatcatgtttt 454  Q
    |||||||||||||||||||||||||||||||||            |||||||||||||||||| |||||||||||||||||| |||||||||||||||||    
T  50202438 aaccacgatcaaagatggataatttaatttacg------------gttagttcaatagcgtgaattagccacaatacatgaactaaattaatcatgtttt 50202351  T
Q  455 caactgaattttttatacacagtatcgtgggtgtgtgaaaaatgattttactacctgataatgcactgtgttaccaaattacaatcaaacacaaaattca 554  Q
    ||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  50202350 caactgaattttt-atacagagtatcgtgggtgtgtgaaaaatgattttactacctgataatgcattgtgttaccaaattacaatcaaacacaaaattca 50202252  T
Q  555 ataaaattcttacagctctgctgtttgtgaatatccatccatccatgttgagaaagcaataacaaaaaacaagttcaatgatgaatgaatacaaagactg 654  Q
    |||||||||||||| ||||||| |||||||||||||||||||    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50202251 ataaaattcttacatctctgctatttgtgaatatccatccat----gttgagaaagcaataacaaaaaacaagttcaatgatgaatgaatacaaagactg 50202156  T
Q  655 tgtgctgtacattgtcaaatcaatctaaacgaatcttatgcacatgtggttactttctaacttgtgtat-aattactaattaaccacgggatgagcggaa 753  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||    
T  50202155 tgtgctgtacattgtcaaatcaatctaaccgaatcttatgcacatgtggttactttctaacctgtgtataaattactaattaaccacgggatgagcggaa 50202056  T
Q  754 tatccgtttgataatggcaacttt 777  Q
    ||||||||||||||||||||||||    
T  50202055 tatccgtttgataatggcaacttt 50202032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 1 - 142
Target Start/End: Complemental strand, 50202921 - 50202761
Alignment:
Q  1 ttggtttatttctggataaggnnnnnnngcaagggaaagtgaaattatgacatggatgttcatggatcaaccgacactgtactc---------------- 84  Q
    |||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||                    
T  50202921 ttggtttatttctggataaggaaaaaaagcaagggaaagtgaaattatgacatggatgttcatggatcaaccgacactgtactctcctaatggctcaaac 50202822  T
Q  85 ---tactaatactactctcttcttttcaataaaacgaagttacctatttaagcttcaactt 142  Q
       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50202821 aaatactaatactactctcttcttttcaataaaacgaagttacctatttaagcttcaactt 50202761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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