View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3034_low_21 (Length: 312)
Name: NF3034_low_21
Description: NF3034
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3034_low_21 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 171; Significance: 8e-92; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 171; E-Value: 8e-92
Query Start/End: Original strand, 18 - 196
Target Start/End: Original strand, 14212306 - 14212484
Alignment:
| Q |
18 |
aaagcaacaacatcttttgtgaatctgcttgaatcaaggttaattatgttttttgcattcagctgttcttgcatcacatcttgaggatccattgggtgaa |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14212306 |
aaagcaacaacatcttttgtgaatctgcttgaatcaaggttaattatgttttttgaactcagctgttcttgcatcacatcttgaggatccattgggtgaa |
14212405 |
T |
|
| Q |
118 |
ccttcccatactgccactaaaatatttaagagaaacaaaagtggcttattttatactgtaaaaaatttgaaagtgtttc |
196 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14212406 |
ccttcccatactgccactaaaatatttaagagaaacaaaagtggcttattttatactgtaaaaaatttgaaagtgtttc |
14212484 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 248 - 295
Target Start/End: Original strand, 14212536 - 14212583
Alignment:
| Q |
248 |
cttactgtattgcaagttttcaatctttgttcatgttgaactgaagta |
295 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14212536 |
cttactgtattgcaagttttcaatctttgttcatgttgaactgaagta |
14212583 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University