View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3034_low_26 (Length: 257)
Name: NF3034_low_26
Description: NF3034
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3034_low_26 |
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Alignment Details
Target: chr4 (Bit Score: 132; Significance: 1e-68; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 25 - 168
Target Start/End: Complemental strand, 54153318 - 54153175
Alignment:
| Q |
25 |
ttgagatcagggcgagtatcatacaaatgttctacctaggttttatcagtgcttggaagctaatggaagataaaacagttctatcaaatggcataacatg |
124 |
Q |
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| T |
54153318 |
ttgagatcagggcgagtatcatacaaatgttctacttaggttttatcaatgcttggaagctaatggaagataaaacagttctatcaaatggcataacatg |
54153219 |
T |
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| Q |
125 |
acaccaaactacctatagaaaagttctgaatcctgagtaaaata |
168 |
Q |
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| T |
54153218 |
acaccaaactacctatagagaagttctgaatcctgagtaaaata |
54153175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 49 - 238
Target Start/End: Complemental strand, 54127985 - 54127798
Alignment:
| Q |
49 |
aaatgttctacctaggttttatcagtgcttggaagctaatggaagataaaacagttctatcaaatggcataacatgacaccaaactacctatagaaaagt |
148 |
Q |
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| T |
54127985 |
aaatgttctacttaggttttatcaatgcttggaagctgattgaagacaaagcagttctatcaaatggcataaaatgacaccaaactacctataaaacagt |
54127886 |
T |
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| Q |
149 |
tctgaatcctgagtaaaatacata-atgcacaactaaattcaaagccgttaataatcatcatcaacattattgtaatatgattcatcacta |
238 |
Q |
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| T |
54127885 |
tctaaaacaggagtaaactacatgcattcacaactatattcaaagctgttaatcatcaccattac---tattgtaatacgattcatcacta |
54127798 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 78 - 211
Target Start/End: Complemental strand, 54141078 - 54140944
Alignment:
| Q |
78 |
tggaagctaatggaagataaaacagttctatcaaatggcataacatgacaccaaactacctatagaaaagttctgaatcctgagtaaaatacat-aatgc |
176 |
Q |
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| T |
54141078 |
tggaagctaatggaaggcaaagcaattctattaaatggcataacatgacaccaaactacctaaaaaacagttcgaaaacatgagtgaaatacatgaatgc |
54140979 |
T |
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| Q |
177 |
acaactaaattcaaagccgttaataatcatcatca |
211 |
Q |
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| T |
54140978 |
acaactaaattcagagctgttaatcatcatcatca |
54140944 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 170 - 241
Target Start/End: Complemental strand, 54152197 - 54152123
Alignment:
| Q |
170 |
ataatgcacaactaaattcaaagccgttaataatcatcatca---acattattgtaatatgattcatcactagtg |
241 |
Q |
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| T |
54152197 |
ataatgcacaactaaattcaaagcggttaatcatcatcatcatcaacattattgtagtatgattcatcactagtg |
54152123 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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