View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3034_low_29 (Length: 250)
Name: NF3034_low_29
Description: NF3034
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3034_low_29 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 11 - 250
Target Start/End: Original strand, 26414512 - 26414751
Alignment:
| Q |
11 |
cacagaccaaacacgcttctttctcttttaacctattcttattcccacacctactacaaacacctcgtttcactagcgaattcttcctcgcctccgccgg |
110 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |
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| T |
26414512 |
cacaaaccaaacacgcttctttctcttttaacctattcttattcccacacctactacaaacacctcgtttcactagcgaattcttccttgcctctgccgg |
26414611 |
T |
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| Q |
111 |
tgatcctactggctcagtcgcaaccgatcgcggcgacgaatagctatcgccgccatcagagtcataaaccctaggctcgttaaatgttaccacagtaggt |
210 |
Q |
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| T |
26414612 |
tgatcctaccggctcagtcgcaaccgatcgcggcgacgaatagctgtcgccgccatcagagtcataaaccctaggctcgttaaatgttaccacagtaggt |
26414711 |
T |
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| Q |
211 |
cgttttccttcaacgacttgagacggtaccggagctgaat |
250 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
26414712 |
cgttttccttcaacgacttgagacggtaccggagctgaat |
26414751 |
T |
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