View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3034_low_3 (Length: 752)
Name: NF3034_low_3
Description: NF3034
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3034_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 367; Significance: 0; HSPs: 11)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 217 - 706
Target Start/End: Complemental strand, 1695214 - 1694736
Alignment:
| Q |
217 |
gattacctaattattaatgttaaccattcatattatgctatttttgtctaatttcagaagaagctgctgctttatcttctcatagaggctgcnnnnnnng |
316 |
Q |
| |
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|||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
1695214 |
gattacctaattattaatgtaaaccattcttattatgctatttttgtctaatttcagaagaagctgctgctttatcttctcatagaggctgctttttttg |
1695115 |
T |
|
| Q |
317 |
ctatcattgttctgataacaatgttggcattacatggcactaccaagaggtctttaattgttgggattatttgtgatatcttcaacatattgatgtatgc |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1695114 |
ctatcattgttctgataacaatgttggcattacatggcactaccaagaggtctttaattgttgggattatttgtgatatcttcaacatattgatgtatgc |
1695015 |
T |
|
| Q |
417 |
ttctcctcttactatcatggtaagtaaagtctattccattaat------ttcagatcatatgaagattatactgtattttctctaaacttgttacatatg |
510 |
Q |
| |
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|||||||||||| |||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1695014 |
ttctcctcttacgatcatggtaagtaacttctattccattaattttatattcagatcatatgaagattatactgtattttctctaaacttgttac----- |
1694920 |
T |
|
| Q |
511 |
aatatatgatgaacaggcaacggttataagaaccaagagtgtgaaatacatgccattctggctctctcttaccaacttcctcaatggactttgctggaca |
610 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1694919 |
---atatgatgaacaggcaacggttataagaaccaagagtgtgaaatacatgccattctggctctctcttaccaacttcctcaatggactttgctggaca |
1694823 |
T |
|
| Q |
611 |
acatatgctctgctccacccctttgacatttatgttctggtaattcatttaatttatattcctatagtattgttgtgacttgtgagttaataattg |
706 |
Q |
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| T |
1694822 |
acatatgctctgctccacccctttgacatttatgttctgg---------taatttatattcctatagtattgttgtgatttgtgagttaataattg |
1694736 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 321 - 731
Target Start/End: Complemental strand, 1684687 - 1684276
Alignment:
| Q |
321 |
cattgttctgataacaatgttggcattacatggcactaccaagaggtctttaattgttgggattatttgtgatatcttcaacatattgatgtatgcttct |
420 |
Q |
| |
|
||||||||||||||||||||||| ||| |||||||||||| ||||||||||||||||| ||| |||||||| |||||||||||||||||||| |||| |
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|
| T |
1684687 |
cattgttctgataacaatgttggtatttcatggcactaccggcaggtctttaattgttggtattgtttgtgatgtcttcaacatattgatgtatatttct |
1684588 |
T |
|
| Q |
421 |
cctcttactatcatggtaagtaaagtctattccattaatttcagatc---atatgaagattatactgtat------------tttctctaaacttgttac |
505 |
Q |
| |
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|||||||| |||||||||||||| ||||||||| ||| || | || ||||||| ||||||||||| |||||||||||||||||| |
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| T |
1684587 |
cctcttacaatcatggtaagtaacttctattccaataactttatattcagatatgaa--ttatactgtatcttataaagtattttctctaaacttgttac |
1684490 |
T |
|
| Q |
506 |
atatgaatatatgatgaacaggcaacggttataagaaccaagagtgtgaaatacatgccattctggctctctcttaccaacttcctcaatggactttgct |
605 |
Q |
| |
|
|||||| |||||| ||||| || |||||||| || ||||||||||||||||||||||||||||||||| | |||||||||||||||||||||| |
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| T |
1684489 |
atatga---tatgatcaacagaaaaaggttataacgactaagagtgtgaaatacatgccattctggctctctgtgtttaacttcctcaatggactttgct |
1684393 |
T |
|
| Q |
606 |
ggacaacatatgctctgctccacccctttgacatttatgttctggtaattcatttaatttatattcctatagtattgttgtgacttgtgagttaataatt |
705 |
Q |
| |
|
|||||||||||||||||||||| ||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1684392 |
ggacaacatatgctctgctccatccctttgacctttatgttctggt---------aatttatattcctatagtattgttgtgacttgtgagttaataatt |
1684302 |
T |
|
| Q |
706 |
ggatgaatgatttatacttaacccat |
731 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
1684301 |
ggatgaatgatttatacttaacccat |
1684276 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 161; E-Value: 2e-85
Query Start/End: Original strand, 19 - 183
Target Start/End: Complemental strand, 1695412 - 1695248
Alignment:
| Q |
19 |
attgtgcattttgggtattctatggaatgccttttgtgcacccaaacagccttttggtagtcactatcaatggtgttggacttgtttttgaggttgtcta |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1695412 |
attgtgcattttgggtattctatggaatgccttttgtgcacccaaacagccttttggtagtcactatcaatggtgttggacttgtttttgaggttgtcta |
1695313 |
T |
|
| Q |
119 |
tcttaccatcttttttatctacgccaacaagaaaggaagggtacgtatgctttcacactataagc |
183 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1695312 |
tcttaccatcttttttatctatgccaacaagaaaggaagggtacgtatgctttcacactataagc |
1695248 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 19 - 179
Target Start/End: Complemental strand, 1971565 - 1971405
Alignment:
| Q |
19 |
attgtgcattttgggtattctatggaatgccttttgtgcacccaaacagccttttggtagtcactatcaatggtgttggacttgtttttgaggttgtcta |
118 |
Q |
| |
|
|||||||||||||||| || |||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| || ||||||| |
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|
| T |
1971565 |
attgtgcattttgggtgttttatggaatgccttttgtgcacccaaacagccttttggtcgtcaccatcaatggtgttggacttgttttcaagtttgtcta |
1971466 |
T |
|
| Q |
119 |
tcttaccatcttttttatctacgccaacaagaaaggaagggtacgtatgctttcacactat |
179 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1971465 |
tcttaccatcttttttatctatgccaacaagaaaggaagggtacgtatgctttcacactat |
1971405 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 125; E-Value: 5e-64
Query Start/End: Original strand, 19 - 179
Target Start/End: Complemental strand, 1685085 - 1684925
Alignment:
| Q |
19 |
attgtgcattttgggtattctatggaatgccttttgtgcacccaaacagccttttggtagtcactatcaatggtgttggacttgtttttgaggttgtcta |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| | ||||||| |
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|
| T |
1685085 |
attgtgcattttgggtattctatggaatgccttttgtgcacccaaacagccttttggtcgtcaccatcaatggtgttggacttgttttcatgattgtcta |
1684986 |
T |
|
| Q |
119 |
tcttaccatcttttttatctacgccaacaagaaaggaagggtacgtatgctttcacactat |
179 |
Q |
| |
|
||||||||||| ||||||||| ||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
1684985 |
tcttaccatctattttatctatgccaacaagaaaggaagggtatgtatgctttcacactat |
1684925 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 513 - 661
Target Start/End: Complemental strand, 1700012 - 1699864
Alignment:
| Q |
513 |
tatatgatgaacaggcaacggttataagaaccaagagtgtgaaatacatgccattctggctctctcttaccaacttcctcaatggactttgctggacaac |
612 |
Q |
| |
|
||||| |||||||||| | |||||||| ||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| | ||||||||||| |
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|
| T |
1700012 |
tatataatgaacaggccaaggttataaaaaccaagagtgtgaaatacatgccattttggctctctctaaccaacttcctcaatggtttgtgctggacaac |
1699913 |
T |
|
| Q |
613 |
atatgctctgctccacccctttgacatttatgttctggtaattcattta |
661 |
Q |
| |
|
||||||||| ||||||| || || |||||||| |||||||| ||||| |
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|
| T |
1699912 |
atatgctctcatccacccattggatatttatgtcttggtaattaattta |
1699864 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 19 - 144
Target Start/End: Complemental strand, 1700857 - 1700732
Alignment:
| Q |
19 |
attgtgcattttgggtattctatggaatgccttttgtgcacccaaacagccttttggtagtcactatcaatggtgttggacttgtttttgaggttgtcta |
118 |
Q |
| |
|
||||||| |||||||| || |||||||||||||||||||||||||||||| ||| || || |||||||| |||||||| || | |||||||||||||| |
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|
| T |
1700857 |
attgtgctttttgggtgttttatggaatgccttttgtgcacccaaacagcactttagttctctctatcaatagtgttggaattctctttgaggttgtcta |
1700758 |
T |
|
| Q |
119 |
tcttaccatcttttttatctacgcca |
144 |
Q |
| |
|
||||||||||||||||||||| |||| |
|
|
| T |
1700757 |
tcttaccatcttttttatctatgcca |
1700732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 265 - 441
Target Start/End: Complemental strand, 1700272 - 1700096
Alignment:
| Q |
265 |
taatttcagaagaagctgctgctttatcttctcatagaggctgcnnnnnnngctatcattgttctgataacaatgttggcattacatggcactaccaaga |
364 |
Q |
| |
|
||||||||||| ||| ||||||||||||||||||| |||||| ||| |||||||||| ||||||||||||||| | |||||||||| || | |
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|
| T |
1700272 |
taatttcagaaaaagttgctgctttatcttctcatcgaggctattttctttgctgtcattgttctaataacaatgttggcacttcatggcactaaaaaaa |
1700173 |
T |
|
| Q |
365 |
ggtctttaattgttgggattatttgtgatatcttcaacatattgatgtatgcttctcctcttactatcatggtaagt |
441 |
Q |
| |
|
| || ||||||||||| || | |||||| ||||||| | |||||||||| ||||||||||| |||||||||||| |
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|
| T |
1700172 |
gatcgttaattgttggtgttctatgtgatgtcttcaatgtcatgatgtatgcatctcctcttacaatcatggtaagt |
1700096 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 514 - 655
Target Start/End: Complemental strand, 1674322 - 1674181
Alignment:
| Q |
514 |
atatgatgaacaggcaacggttataagaaccaagagtgtgaaatacatgccattctggctctctcttaccaacttcctcaatggactttgctggacaaca |
613 |
Q |
| |
|
|||| ||||||||| || ||||||| ||| ||||||||||||||||||||||||| || |||||| | | ||| || |||||| | || ||||||||| |
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|
| T |
1674322 |
atataatgaacaggaaaatgttataaaaacaaagagtgtgaaatacatgccattcttgccctctctggctatctttcttaatggattgtgttggacaaca |
1674223 |
T |
|
| Q |
614 |
tatgctctgctccacccctttgacatttatgttctggtaatt |
655 |
Q |
| |
|
|||||||| || ||||||| ||||||||| | ||||||||| |
|
|
| T |
1674222 |
tatgctctcatcaaccccttcgacatttatctcctggtaatt |
1674181 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 384 - 456
Target Start/End: Complemental strand, 1971087 - 1971015
Alignment:
| Q |
384 |
tatttgtgatatcttcaacatattgatgtatgcttctcctcttactatcatggtaagtaaagtctattccatt |
456 |
Q |
| |
|
|||||||||||||||| |||||||||||||| ||||||||||| ||| |||||||||| ||||||||||| |
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|
| T |
1971087 |
tatttgtgatatcttccccatattgatgtatgtctctcctcttaccatcgtggtaagtaacttctattccatt |
1971015 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 19 - 76
Target Start/End: Complemental strand, 1675715 - 1675658
Alignment:
| Q |
19 |
attgtgcattttgggtattctatggaatgccttttgtgcacccaaacagccttttggt |
76 |
Q |
| |
|
|||||||||||||||||||| ||||| ||||||||||||||||| |||| ||||||| |
|
|
| T |
1675715 |
attgtgcattttgggtattccatggattgccttttgtgcacccagacagaattttggt |
1675658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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