View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3034_low_30 (Length: 249)

Name: NF3034_low_30
Description: NF3034
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3034_low_30
NF3034_low_30
[»] chr1 (4 HSPs)
chr1 (3-244)||(33018736-33018993)
chr1 (169-235)||(17306000-17306067)
chr1 (195-244)||(50972774-50972823)
chr1 (163-234)||(48375042-48375114)
[»] chr7 (2 HSPs)
chr7 (187-235)||(7169190-7169239)
chr7 (193-238)||(19120676-19120721)
[»] chr5 (2 HSPs)
chr5 (169-235)||(8086179-8086246)
chr5 (195-235)||(11761139-11761179)
[»] chr3 (2 HSPs)
chr3 (169-235)||(20765242-20765309)
chr3 (195-235)||(52167282-52167322)
[»] scaffold0056 (1 HSPs)
scaffold0056 (169-235)||(71007-71073)
[»] chr8 (1 HSPs)
chr8 (166-224)||(36919666-36919724)
[»] chr4 (4 HSPs)
chr4 (163-232)||(56297854-56297924)
chr4 (195-244)||(50181133-50181182)
chr4 (166-237)||(2571029-2571101)
chr4 (195-235)||(27344097-27344137)
[»] scaffold0608 (1 HSPs)
scaffold0608 (195-244)||(1593-1642)
[»] chr2 (2 HSPs)
chr2 (195-235)||(4835728-4835768)
chr2 (195-235)||(44644943-44644983)


Alignment Details
Target: chr1 (Bit Score: 160; Significance: 2e-85; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 3 - 244
Target Start/End: Original strand, 33018736 - 33018993
Alignment:
Q  3 ccactttctttgaatcaagttcaaaatcaacattatgcggttgttaatcatgtaatagcatgattagttatagatgtggagggtttttatannnnnnnat 102  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||       ||    
T  33018736 ccactttctttgaatcaagttcaaaatcaacattatgcagttgttaatcatgtaatagcatgattagttatagatgtggagggtttttatatttttttat 33018835  T
Q  103 tagttatataaatattataccaatttttgtctattactttctctccatttctaaattcac----------------gtacattattcacgtaacttatta 186  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||                ||||||||||||||||| ||||||    
T  33018836 tagttatataaatattataccaatttttgtctattactttctctctatttctaaattcacgtcgtatttttacagtgtacattattcacgtaatttatta 33018935  T
Q  187 tgactatatttttaattaatatatgaatacaaatattaacatataagatattcttcga 244  Q
    ||||||||||||||||||||||||||||| |||||||||||| ||||||||| |||||    
T  33018936 tgactatatttttaattaatatatgaatataaatattaacatgtaagatattgttcga 33018993  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 169 - 235
Target Start/End: Original strand, 17306000 - 17306067
Alignment:
Q  169 tattcacgtaacttattatgactata-tttttaattaatatatgaatacaaatattaacatataagat 235  Q
    ||||||| | ||||| | |||||||| |||||||||||||||| ||||||||||||| ||| ||||||    
T  17306000 tattcacttgacttactttgactatactttttaattaatatataaatacaaatattagcatgtaagat 17306067  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 195 - 244
Target Start/End: Complemental strand, 50972823 - 50972774
Alignment:
Q  195 tttttaattaatatatgaatacaaatattaacatataagatattcttcga 244  Q
    ||||||| |||||||| ||||||||| ||||||||||| ||||| |||||    
T  50972823 tttttaaataatatataaatacaaatgttaacatataaaatattgttcga 50972774  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 234
Target Start/End: Original strand, 48375042 - 48375114
Alignment:
Q  163 gtacattattcacgtaacttattatgactata-tttttaattaatatatgaatacaaatattaacatataaga 234  Q
    ||||||||||||| ||||||||| |||  ||| ||||||| |||| ||| ||||||||||||| ||| |||||    
T  48375042 gtacattattcacttaacttattttgatcatattttttaactaatttataaatacaaatattagcatgtaaga 48375114  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 187 - 235
Target Start/End: Original strand, 7169190 - 7169239
Alignment:
Q  187 tgactatattttt-aattaatatatgaatacaaatattaacatataagat 235  Q
    ||||||||||||| || |||||||| ||||||||||||||||||||||||    
T  7169190 tgactatattttttaactaatatataaatacaaatattaacatataagat 7169239  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 193 - 238
Target Start/End: Complemental strand, 19120721 - 19120676
Alignment:
Q  193 tatttttaattaatatatgaatacaaatattaacatataagatatt 238  Q
    |||||||||||||||||| |||| |||||||| ||| |||||||||    
T  19120721 tatttttaattaatatataaatataaatattagcatgtaagatatt 19120676  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 169 - 235
Target Start/End: Complemental strand, 8086246 - 8086179
Alignment:
Q  169 tattcacgtaacttattatgactata-tttttaattaatatatgaatacaaatattaacatataagat 235  Q
    ||||||| | ||||| | |||||||| ||||||| |||||||| ||||||||||||||||| ||||||    
T  8086246 tattcacttgacttactttgactatactttttaactaatatataaatacaaatattaacatgtaagat 8086179  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 195 - 235
Target Start/End: Original strand, 11761139 - 11761179
Alignment:
Q  195 tttttaattaatatatgaatacaaatattaacatataagat 235  Q
    ||||||| |||||||| ||||||||||||||||| ||||||    
T  11761139 tttttaactaatatataaatacaaatattaacatgtaagat 11761179  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 169 - 235
Target Start/End: Original strand, 20765242 - 20765309
Alignment:
Q  169 tattcacgtaacttattatgactata-tttttaattaatatatgaatacaaatattaacatataagat 235  Q
    ||||||| | ||||| | |||||||| ||||||| |||||||| ||||||||||||||||| ||||||    
T  20765242 tattcacttgacttactttgactatactttttaactaatatataaatacaaatattaacatgtaagat 20765309  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 195 - 235
Target Start/End: Original strand, 52167282 - 52167322
Alignment:
Q  195 tttttaattaatatatgaatacaaatattaacatataagat 235  Q
    |||||||||||||||| |||||||||||||| || ||||||    
T  52167282 tttttaattaatatataaatacaaatattaatatgtaagat 52167322  T

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Target: scaffold0056 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0056
Description:

Target: scaffold0056; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 169 - 235
Target Start/End: Original strand, 71007 - 71073
Alignment:
Q  169 tattcacgtaacttattatgactatatttttaattaatatatgaatacaaatattaacatataagat 235  Q
    ||||||| | ||||||| |||| |||||||||| |||| ||| ||||||||||||| ||| ||||||    
T  71007 tattcacttgacttattttgaccatatttttaactaatgtataaatacaaatattagcatttaagat 71073  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 224
Target Start/End: Original strand, 36919666 - 36919724
Alignment:
Q  166 cattattcacgtaacttattatgactatatttttaattaatatatgaatacaaatatta 224  Q
    |||||||||  ||||||||| | || ||||||||||||||||||| |||| ||||||||    
T  36919666 cattattcatataacttattttaaccatatttttaattaatatataaatataaatatta 36919724  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 163 - 232
Target Start/End: Complemental strand, 56297924 - 56297854
Alignment:
Q  163 gtacattattcacgtaacttattatgactatattt-ttaattaatatatgaatacaaatattaacatataa 232  Q
    ||||||||||||| |||||| || |||| |||||| |||| |||||||| ||||||||| ||| |||||||    
T  56297924 gtacattattcacataacttgttttgaccatatttattaactaatatataaatacaaatgttagcatataa 56297854  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 195 - 244
Target Start/End: Original strand, 50181133 - 50181182
Alignment:
Q  195 tttttaattaatatatgaatacaaatattaacatataagatattcttcga 244  Q
    |||||||||||| ||| ||||||||||||| ||| ||||||||| |||||    
T  50181133 tttttaattaatgtataaatacaaatattagcatgtaagatattgttcga 50181182  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 166 - 237
Target Start/End: Complemental strand, 2571101 - 2571029
Alignment:
Q  166 cattattcacgtaacttattatgactatat-ttttaattaatatatgaatacaaatattaacatataagatat 237  Q
    |||||||||| | | ||||| ||||||||| |||||| |||||||| ||||||||| ||| ||| ||||||||    
T  2571101 cattattcacatgatttattttgactatattttttaactaatatataaatacaaatgttagcatgtaagatat 2571029  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 195 - 235
Target Start/End: Complemental strand, 27344137 - 27344097
Alignment:
Q  195 tttttaattaatatatgaatacaaatattaacatataagat 235  Q
    ||||||| |||||||| |||| |||||||||||||||||||    
T  27344137 tttttaactaatatataaataaaaatattaacatataagat 27344097  T

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Target: scaffold0608 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0608
Description:

Target: scaffold0608; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 195 - 244
Target Start/End: Original strand, 1593 - 1642
Alignment:
Q  195 tttttaattaatatatgaatacaaatattaacatataagatattcttcga 244  Q
    |||||||||||| ||| ||||||||||||| ||| ||||||||| |||||    
T  1593 tttttaattaatgtataaatacaaatattagcatgtaagatattgttcga 1642  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 195 - 235
Target Start/End: Original strand, 4835728 - 4835768
Alignment:
Q  195 tttttaattaatatatgaatacaaatattaacatataagat 235  Q
    ||||||| |||||||| ||||||||| ||||||||||||||    
T  4835728 tttttaactaatatataaatacaaatgttaacatataagat 4835768  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 195 - 235
Target Start/End: Original strand, 44644943 - 44644983
Alignment:
Q  195 tttttaattaatatatgaatacaaatattaacatataagat 235  Q
    ||||||| |||||||| |||| |||||||||||||||||||    
T  44644943 tttttaactaatatataaatataaatattaacatataagat 44644983  T

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