View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3034_low_31 (Length: 249)
Name: NF3034_low_31
Description: NF3034
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3034_low_31 |
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Alignment Details
Target: chr7 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 40749207 - 40748968
Alignment:
| Q |
1 |
ctttggaatcctttgttgcatatttcgcagacgaatcggttcgtggccattagagtcttgggagaaagagcaatgacttcagcatctggatctgtaatat |
100 |
Q |
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| T |
40749207 |
ctttggaatcctttgttgcatatttcgcagacgaatcggttcgtggccattagagtcttgggagaaagagcaatgacttcagcatctggatctgtaatat |
40749108 |
T |
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| Q |
101 |
ttcaatccaaatttagtacacatttggaagnnnnnnnntatatagcaaaactaatttatttgttaattatc-aaaggaaaaagtttgactaatattacct |
199 |
Q |
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| T |
40749107 |
ttcaatccaaatttagtacacatttggaagaaaaaaaatatatagcaaaaccaatttatttgttaattatcaaaaggaaaaagtttgactaatattacct |
40749008 |
T |
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| Q |
200 |
ggtgttcctggtagatttctcttcttcttgttggtctgtg |
239 |
Q |
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| T |
40749007 |
ggtgttcctggtagatttctcttcttcttgttggtttgtg |
40748968 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 96
Target Start/End: Original strand, 28496418 - 28496513
Alignment:
| Q |
1 |
ctttggaatcctttgttgcatatttcgcagacgaatcggttcgtggccattagagtcttgggagaaagagcaatgacttcagcatctggatctgta |
96 |
Q |
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| T |
28496418 |
ctttggaaccctttgttgcatatttcacagatgaatctgtttgttgccatgagtgtcttcggtgagagagcaatgacctcggcatctggatctgta |
28496513 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 195 - 229
Target Start/End: Original strand, 28496780 - 28496814
Alignment:
| Q |
195 |
tacctggtgttcctggtagatttctcttcttcttg |
229 |
Q |
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| T |
28496780 |
tacctggtgttcctggaagatttctcttcttcttg |
28496814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 3 - 94
Target Start/End: Original strand, 52248669 - 52248760
Alignment:
| Q |
3 |
ttggaatcctttgttgcatatttcgcagacgaatcggttcgtggccattagagtcttgggagaaagagcaatgacttcagcatctggatctg |
94 |
Q |
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| T |
52248669 |
ttggaatcctttgttgcagatctcgcatatgaaacggttcgttgctagtaaagttttgggtgataaagcgattacttcagcatctggatctg |
52248760 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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