View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3034_low_34 (Length: 225)
Name: NF3034_low_34
Description: NF3034
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3034_low_34 |
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Alignment Details
Target: chr4 (Bit Score: 211; Significance: 1e-116; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 36640677 - 36640896
Alignment:
| Q |
1 |
acaatcccacctatcagctaaacacgccccaccacaacagcatccgaatcagtcaggacagcagcaaactgacagatatacaaatagatttctctatttc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36640677 |
acaatcccacctatcagctaaacacgccccaccacaacagcatccgaatcagtcaggacagcagcaaactgacagatatacaaatagatttctctatttc |
36640776 |
T |
|
| Q |
101 |
tgcaaaataaattttgaattgcaaactagcaagcctcacacacttcaatcctcaggccgccaaattctctgcccctccatattcacgccacgttttgcta |
200 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36640777 |
tgcaaaataaattttgaattgcaaactagcaagc--cacacacttcaatcctcaggccgccaaattctctgcccctccatattcacgccacgttttgcta |
36640874 |
T |
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| Q |
201 |
aagcatctgcaaatgagttcat |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
36640875 |
aagcatctgcaaatgagttcat |
36640896 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 36633309 - 36633530
Alignment:
| Q |
1 |
acaatcccacctatcagctaaacacgccccaccacaacagcatccgaatcagtcaggacagcagcaaactgacagatatacaaatagatttctctatttc |
100 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
36633309 |
acaatcccacctatcagctaaacacaccccaccacaacagcatccgaatcagtcaggacagcagcaaacagacagatatacaaatagatttctctatttc |
36633408 |
T |
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| Q |
101 |
tgcaaaataaattttgaattgcaaactagcaagcctcacacacttcaatcctcaggccgccaaattctctgcccctccatattcacgccacgttttgcta |
200 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |||||||||||||||||||||||||||||||| |||||||| |
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| T |
36633409 |
tgtaaaataaattttgaattgcaaactagcaagcctcacacactttaatccataggccaccaaattctctgcccctccatattcacgccactttttgcta |
36633508 |
T |
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| Q |
201 |
aagcatctgcaaatgagttcat |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
36633509 |
aagcatctgcaaatgagttcat |
36633530 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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