View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3034_low_38 (Length: 213)
Name: NF3034_low_38
Description: NF3034
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3034_low_38 |
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Alignment Details
Target: chr4 (Bit Score: 147; Significance: 1e-77; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 1 - 197
Target Start/End: Original strand, 3291184 - 3291386
Alignment:
| Q |
1 |
tgaaggtgtagagttagtataaagagaagtttgataagt---ggttgctattttaaagtaaggaatccatgttatttaaaaggtaaagagcaaga---tg |
94 |
Q |
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| T |
3291184 |
tgaaggtgtagagttagtataaagagaaggttgataagtaatggttcctattttaaagtaaggaatccatgttatttaaaaggtaaagagcaagaagatg |
3291283 |
T |
|
| Q |
95 |
gctaaaagaggatgatgctaatacaatatgctttcatgtttgtgccaagagtaggaagagcttgaatgcggtggtggcactaagaagtggggaaaggtgg |
194 |
Q |
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||||||||||| |||||||||||||| || ||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
3291284 |
gctaaaagagggtgatgctaatacaagatactttcatgtttgtgctaagagtaggaagagcttgaatgcggtggtggcgctaagaagtggggaaaggtgg |
3291383 |
T |
|
| Q |
195 |
gtg |
197 |
Q |
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||| |
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| T |
3291384 |
gtg |
3291386 |
T |
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