View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3034_low_5 (Length: 596)
Name: NF3034_low_5
Description: NF3034
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3034_low_5 |
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| [»] scaffold0259 (1 HSPs) |
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Alignment Details
Target: scaffold0259 (Bit Score: 531; Significance: 0; HSPs: 1)
Name: scaffold0259
Description:
Target: scaffold0259; HSP #1
Raw Score: 531; E-Value: 0
Query Start/End: Original strand, 20 - 562
Target Start/End: Original strand, 2785 - 3327
Alignment:
| Q |
20 |
taaataaggctttgtgatctctttgaaaaataagggagacgtgtaagagtgagatggattcgttcaagagtttattgtggagaatagagttatctgttta |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2785 |
taaataaggctttgtgatctctttgaaaaataagggagacgtgtaagagtgagatggattcgttcaagagtttattgtggagaatagagttatctgttta |
2884 |
T |
|
| Q |
120 |
tggtttattttacataaaagtgaaaccatggttctcgttaactcttgctcaaaggtctacatgcttgacgtggctttgattgaatttaaaatggcaaggt |
219 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
2885 |
tggtttattttacataaaagtgaaaccatggttctcgttaactcttgctcaaaggtctacatgcttgtcgtggctttgattgaatttaaaatggcaaggt |
2984 |
T |
|
| Q |
220 |
tgagatagaataatgaaacgcatggcccaaaacaaatagcaaataaaaatggcgattaaatggacatagaaacatatggcactacaaagatctttgagag |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2985 |
tgagatagaataatgaaacgcatggcccaaaacaaatagcaaataaaaatggcgattaaatggacatagaaacatatggcactacaaagatctttgagag |
3084 |
T |
|
| Q |
320 |
agatggttttgttaagcagaccttatgaattgttttcagtctcttcctaattgtgggttagcaccagaatttaatataaggtgggtttggagagaaaata |
419 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3085 |
agatggttttgttaagcagaccttatgaattgttttcagtctcttcctaattgtgggttagcaccagaatttaatataaggtgggtttggagagaaaata |
3184 |
T |
|
| Q |
420 |
ggatatattagtggtgttagctggtccagtaaagtggtacgtaggattaagaagtgggaggaagttagtttctaatcatgtagaacaagtcatggtacta |
519 |
Q |
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| T |
3185 |
ggatatattagtggtgttagctggtccagtaaagtggtacgtaggattaggaagtgggaggaagttagtttctaatcatgtagaacaagtcatggtacta |
3284 |
T |
|
| Q |
520 |
tctagtctagttcatgtaatccaactacctaaatttcagctca |
562 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||| |
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| T |
3285 |
tctagtctagttcatgtaatccaactacctaaattttagctca |
3327 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 295; Significance: 1e-165; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 20 - 379
Target Start/End: Original strand, 10530403 - 10530777
Alignment:
| Q |
20 |
taaataaggctttgtgatctctttgaaaaataagggagacgtgtaagagtgagatggattcgttcaagagtttattgtggagaatagagttatctgttta |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10530403 |
taaataaggctttgtgatctctttgaaaaataagggagacgtgtaagagtgagatggattcgttcaagagtttattgtggagaatagagttatctgttta |
10530502 |
T |
|
| Q |
120 |
tggtttattttacataaaagtgaaaccatggt--tctcgttaactcttgctcaaaggtctacatgcttgacgtggctttgattgaatttaaaatggcaag |
217 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||| |
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| T |
10530503 |
tggtttattttacataaaagtgaaaccatggttctctcgttaactcttgctcaaaggtctacatgcttgtcgtagctttgattgaatttaaaatggcaag |
10530602 |
T |
|
| Q |
218 |
gttgagatagaataatgaaacgcatggcccaaaacaaatagcaaataaaaatggcgatt--aaatggacatagaaacatatggcactacaaagatctttg |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
10530603 |
gttgagatagaataatgaaacgcatggcccaaaacaaataggaaataaaaatggtgattaaaaatggacatagaaacatatggcactacaaagatctttg |
10530702 |
T |
|
| Q |
316 |
agagag-----------atggttttgttaagcagaccttatgaattgttttcagtctcttcctaattgtgggtta |
379 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
10530703 |
agagagatggtgtgtatatggttttgttaagcagaccttatgaattgttttccgtctcttcctaattgtgggtta |
10530777 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 106; Significance: 9e-53; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 106; E-Value: 9e-53
Query Start/End: Original strand, 20 - 125
Target Start/End: Original strand, 9818440 - 9818545
Alignment:
| Q |
20 |
taaataaggctttgtgatctctttgaaaaataagggagacgtgtaagagtgagatggattcgttcaagagtttattgtggagaatagagttatctgttta |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9818440 |
taaataaggctttgtgatctctttgaaaaataagggagacgtgtaagagtgagatggattcgttcaagagtttattgtggagaatagagttatctgttta |
9818539 |
T |
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| Q |
120 |
tggttt |
125 |
Q |
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|||||| |
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| T |
9818540 |
tggttt |
9818545 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 164 - 277
Target Start/End: Original strand, 9818544 - 9818657
Alignment:
| Q |
164 |
ttgctcaaaggtctacatgcttgacgtggctttgattgaatttaaaatggcaaggttgagatagaataatgaaacgcatggcccaaaacaaatagcaaat |
263 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
9818544 |
ttgctcaaaggtctacatgcttgtcgtggctttgattgaatttaaaatggcaaggttgagatagaataatgaaacgcatggcccaaaacaaataggaaat |
9818643 |
T |
|
| Q |
264 |
aaaaatggcgatta |
277 |
Q |
| |
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|||||||| ||||| |
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| T |
9818644 |
aaaaatggtgatta |
9818657 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 322 - 379
Target Start/End: Original strand, 9818687 - 9818744
Alignment:
| Q |
322 |
atggttttgttaagcagaccttatgaattgttttcagtctcttcctaattgtgggtta |
379 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
9818687 |
atggttttgttaagcagaccttatgaattgttttaagtctcttcctaattgtgggtta |
9818744 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 200 - 237
Target Start/End: Original strand, 16108408 - 16108445
Alignment:
| Q |
200 |
tgaatttaaaatggcaaggttgagatagaataatgaaa |
237 |
Q |
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||||||||||||||||||||||| |||||| ||||||| |
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| T |
16108408 |
tgaatttaaaatggcaaggttgaaatagaagaatgaaa |
16108445 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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