View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3034_low_6 (Length: 545)

Name: NF3034_low_6
Description: NF3034
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3034_low_6
NF3034_low_6
[»] chr3 (5 HSPs)
chr3 (12-533)||(50101700-50102221)
chr3 (262-327)||(46431754-46431819)
chr3 (263-327)||(41452816-41452880)
chr3 (262-327)||(43308704-43308769)
chr3 (278-326)||(33307257-33307305)
[»] chr4 (6 HSPs)
chr4 (225-341)||(40018227-40018344)
chr4 (248-334)||(934492-934578)
chr4 (252-325)||(21879218-21879292)
chr4 (248-313)||(25755472-25755537)
chr4 (225-333)||(47372786-47372895)
chr4 (248-327)||(47147515-47147592)
[»] chr1 (6 HSPs)
chr1 (248-313)||(15577574-15577639)
chr1 (263-327)||(12231507-12231571)
chr1 (266-330)||(3818935-3818999)
chr1 (225-327)||(42501250-42501352)
chr1 (181-214)||(26299324-26299357)
chr1 (267-327)||(8342961-8343021)
[»] chr5 (2 HSPs)
chr5 (263-313)||(28186851-28186901)
chr5 (263-327)||(9917526-9917590)
[»] chr2 (5 HSPs)
chr2 (266-327)||(26784419-26784480)
chr2 (264-338)||(31254418-31254493)
chr2 (228-322)||(1626342-1626436)
chr2 (225-313)||(8197579-8197667)
chr2 (225-313)||(8202339-8202427)
[»] chr7 (3 HSPs)
chr7 (275-327)||(45601618-45601670)
chr7 (256-327)||(29653615-29653686)
chr7 (262-306)||(41578198-41578242)
[»] chr6 (1 HSPs)
chr6 (184-327)||(34501-34645)
[»] scaffold0018 (1 HSPs)
scaffold0018 (276-327)||(178509-178560)
[»] chr8 (5 HSPs)
chr8 (262-327)||(38178335-38178400)
chr8 (262-306)||(10079982-10080026)
chr8 (263-327)||(24739924-24739988)
chr8 (275-327)||(30198354-30198406)
chr8 (267-327)||(39967579-39967639)


Alignment Details
Target: chr3 (Bit Score: 506; Significance: 0; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 506; E-Value: 0
Query Start/End: Original strand, 12 - 533
Target Start/End: Complemental strand, 50102221 - 50101700
Alignment:
Q  12 atgaaaaacataacccaagaaacaattagatcaacatagtaatggttaccctccagtgctttttcccaggccatttactacagacagagcaatcataaaa 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50102221 atgaaaaacataacccaagaaacaattagatcaacatagtaatggttaccctccagtgctttttcccaggccatttactacagacagagcaatcataaaa 50102122  T
Q  112 catatatttttgatagtctttaatcatatcaagctcatcgaaatctgaatcgacaatgtatttaattgttacaacaacaacagcaaccaagtctaatccc 211  Q
    |||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50102121 catatatttttgatggtctttaatcatatcaagctcatctaaatctgaatcgacaatgtatttaattgttacaacaacaacagcaaccaagtctaatccc 50102022  T
Q  212 actggtggaattagctacatgaatcaaacgactttgtaatgatctatgagatatcatatctctatccaactcattactctccatatctttcttaatggtt 311  Q
    ||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50102021 actggtgggtttagctacatgaatcaaacgactttgtaatgatctatgagatatcatatctctatccaactcattactctccatatctttcttaatggtt 50101922  T
Q  312 tcagttatagtttttcaagtctttctttgcttttggttgatttttctaccctccatccaacccactctccttactatagaatctgcaagcctagtttcca 411  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50101921 tcagttatagtttttcaagtctttctttgcttttggttgatttttctaccctccatccaacccactctccttactatagaatctgcaagcctagtttcca 50101822  T
Q  412 gcatcttttctaattgttaaagtaactaaaaacacataaaaatatttcattttaggaacatacacattgcatttaaaacgcaatccacaaaaggcaagca 511  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50101821 gcatcttttctaattgttaaagtaactaaaaacacataaaaatatttcattttaggaacatacacattgcatttaaaacgcaatccacaaaaggcaagca 50101722  T
Q  512 tttgaatttcaatgaaaacaat 533  Q
    ||||||||||||||||||||||    
T  50101721 tttgaatttcaatgaaaacaat 50101700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 262 - 327
Target Start/End: Original strand, 46431754 - 46431819
Alignment:
Q  262 atatcatatctctatccaactcattactctccatatctttcttaatggtttcagttatagtttttc 327  Q
    |||| ||||||||||||||||||||| |||| | |||||| ||||| |||||  ||||||||||||    
T  46431754 atataatatctctatccaactcattaatctctagatcttttttaatagtttctcttatagtttttc 46431819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 263 - 327
Target Start/End: Original strand, 41452816 - 41452880
Alignment:
Q  263 tatcatatctctatccaactcattactctccatatctttcttaatggtttcagttatagtttttc 327  Q
    |||||||| | |||||||||||||| |||| | |||||||||||| |||| | ||||||||||||    
T  41452816 tatcatatatttatccaactcattaatctctagatctttcttaatagtttaacttatagtttttc 41452880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 262 - 327
Target Start/End: Complemental strand, 43308769 - 43308704
Alignment:
Q  262 atatcatatctctatccaactcattactctccatatctttcttaatggtttcagttatagtttttc 327  Q
    ||||||||||||||||||||| |||| |||| | || ||||||||| |||||  || |||||||||    
T  43308769 atatcatatctctatccaactgattaatctctagatttttcttaatagtttctcttgtagtttttc 43308704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 278 - 326
Target Start/End: Complemental strand, 33307305 - 33307257
Alignment:
Q  278 caactcattactctccatatctttcttaatggtttcagttatagttttt 326  Q
    |||||||||| |||| | ||||||||||||||||||  |||||||||||    
T  33307305 caactcattaatctctagatctttcttaatggtttcccttatagttttt 33307257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000003; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 225 - 341
Target Start/End: Original strand, 40018227 - 40018344
Alignment:
Q  225 gctacatgaatcaaacgactttgtaatgatctatgagatatcatatctctatccaactcattactctccatatctttcttaatggtttcagttatagttt 324  Q
    |||||||| ||||||||||   |||||| ||||| | |||||||||| ||||||||||||||  |||| | |||||||||||  ||||   |||||||||    
T  40018227 gctacatggatcaaacgacgccgtaatgttctatcatatatcatatccctatccaactcattgatctctagatctttcttaacagtttttcttatagttt 40018326  T
Q  325 ttc-aagtctttctttgc 341  Q
    ||| |||||||| |||||    
T  40018327 ttctaagtctttatttgc 40018344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 248 - 334
Target Start/End: Original strand, 934492 - 934578
Alignment:
Q  248 taatgatctatgagatatcatatctctatccaactcattactctccatatctttcttaatggtttcagttatagtttttcaagtctt 334  Q
    ||||| ||||| | |||||||| | ||||||||||||||| |||| | | |||||||||| |||||  | |||||||||| ||||||    
T  934492 taatgttctatcatatatcataaccctatccaactcattaatctctagaactttcttaatagtttctctaatagtttttctagtctt 934578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 252 - 325
Target Start/End: Original strand, 21879218 - 21879292
Alignment:
Q  252 gatctatgagatatcatatctctatccaactcattactctccatatctttctt-aatggtttcagttatagtttt 325  Q
    ||||||| | |||||||||||||||||||||||||  |||| | ||||||||| ||| |||||  ||||||||||    
T  21879218 gatctatcatatatcatatctctatccaactcattcatctctagatctttcttgaatagtttctcttatagtttt 21879292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 248 - 313
Target Start/End: Complemental strand, 25755537 - 25755472
Alignment:
Q  248 taatgatctatgagatatcatatctctatccaactcattactctccatatctttcttaatggtttc 313  Q
    ||||| ||||||| |||||||||| ||||||||||||||| || |||  |||| |||||| |||||    
T  25755537 taatgttctatgatatatcatatccctatccaactcattaatccccaagtcttacttaatagtttc 25755472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 225 - 333
Target Start/End: Complemental strand, 47372895 - 47372786
Alignment:
Q  225 gctacatgaatcaaacgactttgtaatgatctatgagatatcatatctctatccaactcattactctccatatctttcttaatggtttcagttatagttt 324  Q
    |||||||| |||||||||||   ||||| ||||| | ||| ||||| |||||||||||||||| ||||   |||||| ||| | |||||  |||||||||    
T  47372895 gctacatggatcaaacgactccataatgttctataatataccatatttctatccaactcattaatctctggatctttattagtagtttctcttatagttt 47372796  T
Q  325 t-tcaagtct 333  Q
    | ||||||||    
T  47372795 tctcaagtct 47372786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 248 - 327
Target Start/End: Complemental strand, 47147592 - 47147515
Alignment:
Q  248 taatgatctatgagatatcatatctctatccaactcattactctccatatctttcttaatggtttcagttatagtttttc 327  Q
    ||||| ||||| | |||||||||||  ||||||||||||| |||| | |||||||||||| |||||   |||||||||||    
T  47147592 taatgttctatcatatatcatatct--atccaactcattaatctctagatctttcttaatagtttcttctatagtttttc 47147515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000003; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 248 - 313
Target Start/End: Complemental strand, 15577639 - 15577574
Alignment:
Q  248 taatgatctatgagatatcatatctctatccaactcattactctccatatctttcttaatggtttc 313  Q
    ||||| ||||| | |||||||||||||||||||||||||| |||| ||||| |||||||| |||||    
T  15577639 taatgttctatcaaatatcatatctctatccaactcattaatctctatatccttcttaatagtttc 15577574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 263 - 327
Target Start/End: Complemental strand, 12231571 - 12231507
Alignment:
Q  263 tatcatatctctatccaactcattactctccatatctttcttaatggtttcagttatagtttttc 327  Q
    ||||||||||||||||||||||||| |||| | |||||||||||| || ||  ||||||||||||    
T  12231571 tatcatatctctatccaactcattaatctcgagatctttcttaatagtctctcttatagtttttc 12231507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 266 - 330
Target Start/End: Original strand, 3818935 - 3818999
Alignment:
Q  266 catatctctatccaactcattactctccatatctttcttaatggtttcagttatagtttttcaag 330  Q
    ||||| ||||| |||||||||| |||| | |||||||||||| |||||  |||||||||||||||    
T  3818935 catatttctattcaactcattaatctctaaatctttcttaatagtttctcttatagtttttcaag 3818999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 225 - 327
Target Start/End: Complemental strand, 42501352 - 42501250
Alignment:
Q  225 gctacatgaatcaaacgactttgtaatgatctatgagatatcatatctctatccaactcattactctccatatctttcttaatggtttcagttatagttt 324  Q
    |||||||| || |||||||  ||||||| ||||| | ||  ||||| |||||||||||||||| |||  | ||||||||||||  ||||  |||||||||    
T  42501352 gctacatggattaaacgacgctgtaatgttctatcatattccatatttctatccaactcattaatctatagatctttcttaataatttctcttatagttt 42501253  T
Q  325 ttc 327  Q
    |||    
T  42501252 ttc 42501250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 181 - 214
Target Start/End: Complemental strand, 26299357 - 26299324
Alignment:
Q  181 tacaacaacaacagcaaccaagtctaatcccact 214  Q
    ||||||||||||||||||||||||| ||||||||    
T  26299357 tacaacaacaacagcaaccaagtcttatcccact 26299324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 267 - 327
Target Start/End: Original strand, 8342961 - 8343021
Alignment:
Q  267 atatctctatccaactcattactctccatatctttcttaatggtttcagttatagtttttc 327  Q
    |||| |||||||||||||||| |||| | |||||| ||||| |||||  ||||||||||||    
T  8342961 atatttctatccaactcattaatctctagatctttattaattgtttctcttatagtttttc 8343021  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 263 - 313
Target Start/End: Original strand, 28186851 - 28186901
Alignment:
Q  263 tatcatatctctatccaactcattactctccatatctttcttaatggtttc 313  Q
    ||||||||||||||||||||||||| |||| | |||||||||||| |||||    
T  28186851 tatcatatctctatccaactcattaatctctaaatctttcttaatagtttc 28186901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 263 - 327
Target Start/End: Original strand, 9917526 - 9917590
Alignment:
Q  263 tatcatatctctatccaactcattactctccatatctttcttaatggtttcagttatagtttttc 327  Q
    ||||||||||||||||||||||||  |||| |||||||||| ||| |||||  | ||||||||||    
T  9917526 tatcatatctctatccaactcattgatctctatatctttctaaatagtttctctaatagtttttc 9917590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000008; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 266 - 327
Target Start/End: Original strand, 26784419 - 26784480
Alignment:
Q  266 catatctctatccaactcattactctccatatctttcttaatggtttcagttatagtttttc 327  Q
    ||||| ||||| |||||||||| |||| |||||||||||||| |||||  ||||||||||||    
T  26784419 catatttctattcaactcattaatctctatatctttcttaatagtttctcttatagtttttc 26784480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 264 - 338
Target Start/End: Complemental strand, 31254493 - 31254418
Alignment:
Q  264 atcatatctctatccaactcattactctccatatctttcttaatggtttcagttatagtttttca-agtctttctt 338  Q
    ||||||| ||||| |||||||||| |||| | |||||||||||| |||| | ||| ||||||||| ||||||||||    
T  31254493 atcatatttctattcaactcattaatctctagatctttcttaatagtttaacttacagtttttcacagtctttctt 31254418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 228 - 322
Target Start/End: Complemental strand, 1626436 - 1626342
Alignment:
Q  228 acatgaatcaaacgactttgtaatgatctatgagatatcatatctctatccaactcattactctccatatctttcttaatggtttcagttatagt 322  Q
    ||||| ||||||| || ||| |||| ||||| | ||||||||| | ||| |||||||||| |||| | |||||||||||| |||||  |||||||    
T  1626436 acatggatcaaacaacgttgcaatgttctattatatatcatatttttatacaactcattaatctctagatctttcttaatagtttctcttatagt 1626342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 225 - 313
Target Start/End: Original strand, 8197579 - 8197667
Alignment:
Q  225 gctacatgaatcaaacgactttgtaatgatctatgagatatcatatctctatccaactcattactctccatatctttcttaatggtttc 313  Q
    |||||||| ||||||||||    ||||  ||||| | ||||||||| |||||||||||||||| |||  | |||||||||||| |||||    
T  8197579 gctacatggatcaaacgacgccataatattctatcatatatcatatttctatccaactcattaatctttagatctttcttaatagtttc 8197667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 225 - 313
Target Start/End: Original strand, 8202339 - 8202427
Alignment:
Q  225 gctacatgaatcaaacgactttgtaatgatctatgagatatcatatctctatccaactcattactctccatatctttcttaatggtttc 313  Q
    |||||||| ||||||||||    ||||  ||||| | ||||||||| |||||||||||||||| |||  | |||||||||||| |||||    
T  8202339 gctacatggatcaaacgacgccataatattctatcatatatcatatttctatccaactcattaatctttagatctttcttaatagtttc 8202427  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 275 - 327
Target Start/End: Complemental strand, 45601670 - 45601618
Alignment:
Q  275 atccaactcattactctccatatctttcttaatggtttcagttatagtttttc 327  Q
    ||||||||||||| |||| | ||||||||||||||||||  ||||||||||||    
T  45601670 atccaactcattaatctctagatctttcttaatggtttctcttatagtttttc 45601618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 256 - 327
Target Start/End: Original strand, 29653615 - 29653686
Alignment:
Q  256 tatgagatatcatatctctatccaactcattactctccatatctttcttaatggtttcagttatagtttttc 327  Q
    ||||| ||||||||| |||||| ||||||||| |||| | |||||||||||| |||||  ||| ||||||||    
T  29653615 tatgatatatcatatttctatctaactcattaatctctagatctttcttaatagtttctcttacagtttttc 29653686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 262 - 306
Target Start/End: Original strand, 41578198 - 41578242
Alignment:
Q  262 atatcatatctctatccaactcattactctccatatctttcttaa 306  Q
    ||||||||||||||||||||||| || |||| |||| ||||||||    
T  41578198 atatcatatctctatccaactcactaatctctatatgtttcttaa 41578242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 184 - 327
Target Start/End: Original strand, 34501 - 34645
Alignment:
Q  184 aacaacaacagcaaccaagtctaatcccactg-gtggaattagctacatgaatcaaacgactttgtaatgatctatgagatatcatatctctatccaact 282  Q
    |||||||||| ||||||||||| ||||||||  ||||  | ||||||||| ||||||  ||    ||||| ||||| | | | ||||| || ||||||||    
T  34501 aacaacaacaacaaccaagtcttatcccactaagtggggtcagctacatggatcaaattacgccataatgttctatcataaaccatatttcaatccaact 34600  T
Q  283 cattactctccatatctttcttaatggtttcagttatagtttttc 327  Q
    ||||| |||  | ||||||||||||||||||  ||||||||||||    
T  34601 cattaatctttagatctttcttaatggtttctcttatagtttttc 34645  T

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Target: scaffold0018 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 276 - 327
Target Start/End: Original strand, 178509 - 178560
Alignment:
Q  276 tccaactcattactctccatatctttcttaatggtttcagttatagtttttc 327  Q
    |||||||||||| |||| |||||||||||||| |||||  ||||||||||||    
T  178509 tccaactcattaatctctatatctttcttaatagtttctcttatagtttttc 178560  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 262 - 327
Target Start/End: Original strand, 38178335 - 38178400
Alignment:
Q  262 atatcatatctctatccaactcattactctccatatctttcttaatggtttcagttatagtttttc 327  Q
    |||||||||||||||||||||||||| | || |  ||||| ||||| |||||  ||||||||||||    
T  38178335 atatcatatctctatccaactcattaatgtctaggtctttgttaatagtttctcttatagtttttc 38178400  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 262 - 306
Target Start/End: Original strand, 10079982 - 10080026
Alignment:
Q  262 atatcatatctctatccaactcattactctccatatctttcttaa 306  Q
    ||||||||| |||||||||||||||| |||| | |||||||||||    
T  10079982 atatcatatttctatccaactcattaatctctagatctttcttaa 10080026  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 263 - 327
Target Start/End: Original strand, 24739924 - 24739988
Alignment:
Q  263 tatcatatctctatccaactcattactctccatatctttcttaatggtttcagttatagtttttc 327  Q
    |||||||||||||||||||| |||| |||| | |||||||| ||| |||||  ||||| ||||||    
T  24739924 tatcatatctctatccaactgattaatctctacatctttctcaatagtttctcttataatttttc 24739988  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 275 - 327
Target Start/End: Original strand, 30198354 - 30198406
Alignment:
Q  275 atccaactcattactctccatatctttcttaatggtttcagttatagtttttc 327  Q
    ||||||||||||| |||| ||||||||||||||  ||||  ||||||||||||    
T  30198354 atccaactcattaatctcaatatctttcttaataatttctcttatagtttttc 30198406  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 267 - 327
Target Start/End: Original strand, 39967579 - 39967639
Alignment:
Q  267 atatctctatccaactcattactctccatatctttcttaatggtttcagttatagtttttc 327  Q
    ||||||| ||||||||||||| || | | |||||||||||| |||||  ||||||||||||    
T  39967579 atatctcaatccaactcattaatcgctagatctttcttaatagtttctcttatagtttttc 39967639  T

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