View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3034_low_9 (Length: 503)
Name: NF3034_low_9
Description: NF3034
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3034_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 321; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 83 - 482
Target Start/End: Original strand, 2761293 - 2761689
Alignment:
| Q |
83 |
cacacaaaccattggtccatcatggaaggttttcagctttaggaggnnnnnnnnnnnnnnnnnctgcggtagtttcatgatgaagacaaaacgtagagta |
182 |
Q |
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| T |
2761293 |
cacacaaaccattggtccatcatggaaggttttcagctttaggag---tagtagtagtagtagctgcggtagtttcatgatgaagacaaaacgtagagta |
2761389 |
T |
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| Q |
183 |
cgcaggacaaaagataaggatacgaaataccacacatttcaaatacaaaatgtaacaatctgtttcttccccaaactttttagatatgtcgtcaacacca |
282 |
Q |
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| T |
2761390 |
cgcaggacaaaagataaggatacgaaataccacacatttcaaatacaaaatgtaacaatctgtttcttgcccaaactttttagatatgtcgtcaacacca |
2761489 |
T |
|
| Q |
283 |
ccatctttctcttttcctgcaccctcaacactataatcattcagagttgcaacaataaggagaatcaaaattagtgaagcagtgatggttttggccattg |
382 |
Q |
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| T |
2761490 |
acatctttctcttttcctgcaccttcaacactataatcattcagagttgcaacaataaggagaatcaaaattagtgaagcagtgatggttttggccattg |
2761589 |
T |
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| Q |
383 |
tgtaagtaagagtatttgcatggaataaattggctacaaatcattccaatttatagaacttgtgatttccttgaatgataagtgaacgtgttgaatttgg |
482 |
Q |
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| T |
2761590 |
tgtaagtaagagtatttgcatggaataaattggctacaaataattccaatttatagaacttgtgatttccttgaatgataagtgaacgtattgaatttgg |
2761689 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 397 - 468
Target Start/End: Original strand, 11952570 - 11952641
Alignment:
| Q |
397 |
tttgcatggaataaattggctacaaatcattccaatttatagaacttgtgatttccttgaatgataagtgaa |
468 |
Q |
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| T |
11952570 |
tttgcatggaataaaagggctctaaattagtctaatttatagaactagtgatttccttaaatgagaagtgaa |
11952641 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 299 - 380
Target Start/End: Original strand, 41814414 - 41814495
Alignment:
| Q |
299 |
ctgcaccctcaacactataatcattcagagttgcaacaataaggagaatcaaaattagtgaagcagtgatggttttggccat |
380 |
Q |
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| T |
41814414 |
ctgcaccctcaacactacaatcattgataattgccacaacaaggagaactaaaatcaatgaagtagtgatgatttttgccat |
41814495 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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