View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3035_low_1 (Length: 455)
Name: NF3035_low_1
Description: NF3035
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3035_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 317; Significance: 1e-179; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 19 - 398
Target Start/End: Complemental strand, 38733908 - 38733528
Alignment:
| Q |
19 |
atttaaagaagcaaccatatcatctgatcaatgaaatgttaaagtaaatatattgttgggtaatgtattacgaaactgtgctcaagaccgggaaaaaact |
118 |
Q |
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| T |
38733908 |
atttaaagaagcaaccatatcatctggtcaatgaaatgttaaagtaaatatattgttggataatgtattacgaaactgtgctcaagaccgggaaaaaact |
38733809 |
T |
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| Q |
119 |
cattnnnnnnnngattcaccatatatatagagatgtgacagggatatccgaacatatcgagaatacgattcaatttttcatctccgataaatatgaatag |
218 |
Q |
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| T |
38733808 |
cattaaaaaaaagattcaccatatgtatggagatgtgacagggatattcgaacatatcgagaatacgattcaatttttcatctccgataaatatgaatag |
38733709 |
T |
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| Q |
219 |
tctagtaaa-ttatagattaaacgtccaatttagtcattcacttttgtagaatgcatcaatttgatccctctcttttataatatgttacactagtccctc |
317 |
Q |
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| T |
38733708 |
tctagtaaaattatagattaaaggtccaatttagtcattcacttttgtagaatgcatcaatttgatccctctcttttataaaatgttacactagtccctc |
38733609 |
T |
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| Q |
318 |
acttcacacaaagttagtccctccatacatatcaaaaagtttgtcgtgtcaaattggaatctctgaattgtcatactgaat |
398 |
Q |
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| T |
38733608 |
acttcacacaaagttagtccttccatacatatcaaaaagtttgtcgtgtcaaattggaatctctgaattgtcatactgaat |
38733528 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 19 - 89
Target Start/End: Original strand, 5864440 - 5864510
Alignment:
| Q |
19 |
atttaaagaagcaaccatatcatctgatcaatgaaatgttaaagtaaatatattgttgggtaatgtattac |
89 |
Q |
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| T |
5864440 |
atttaaaagagcaaccaaatcatttggtcaatgaaatcttaaagtaaacataatgttgggtaatgtattac |
5864510 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 52 - 89
Target Start/End: Original strand, 4766520 - 4766557
Alignment:
| Q |
52 |
aaatgttaaagtaaatatattgttgggtaatgtattac |
89 |
Q |
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| T |
4766520 |
aaatgttaaagtaaacatattgttggataatgtattac |
4766557 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 84
Target Start/End: Original strand, 32392540 - 32392605
Alignment:
| Q |
19 |
atttaaagaagcaaccatatcatctgatcaatgaaatgttaaagtaaatatattgttgggtaatgt |
84 |
Q |
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| T |
32392540 |
atttaaagtagcaaccaaatcatccgatcaaagaaatgttaaaatgaacatattgttagataatgt |
32392605 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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