View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3035_low_2 (Length: 443)
Name: NF3035_low_2
Description: NF3035
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3035_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 381; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 19 - 428
Target Start/End: Original strand, 36676673 - 36677082
Alignment:
| Q |
19 |
gtacctactcataatcgttgtttctaaaaggatctgccttttaaacaaatgagagtcgaatagtctcttaatagctagtaattgaccattaggcagaaat |
118 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
36676673 |
gtacctactcataatcgttgtttctaaaaggatctgccttttaaacaaatgagagtcgaatagtctcttaacagctagtaattgaccattaggcagaaat |
36676772 |
T |
|
| Q |
119 |
ccttggtacatcattcccatctttcctaccccaatggcattgtccacagcaaaacaatcggttgcgtcacgcagttcttccaaccatattgttgaattta |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36676773 |
ccttggtacatcattcccatctttcctaccccaatggcattgtccacagcaaaacaatcggttgcgtcacgcagttcttccaaccatattgttgaattta |
36676872 |
T |
|
| Q |
219 |
gtctctccattagtatagagatctgtggatgcatgtgtaattgttttttacaacagacaatatatactgatttacctnnnnnnncaattcaaaacaagaa |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
36676873 |
gtctctccattagtatagagatctgtggatgcatgtgtaattgttttttacaacagacaatatatactgatttacctaaaaaaacaattcaaaacaagaa |
36676972 |
T |
|
| Q |
319 |
gtgtttaaaaagatagaactatttaaagaagagaatgagtacctctttggtttctttgtgtacaatccacgaatgtaacaattggtgcatctgatcagct |
418 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36676973 |
gtgtttaaaaagatagaactatttaaagaacagaatgagtacctctttggtttctttgtgtacaatccacgaatgtaacaattggtgcatctgatcagct |
36677072 |
T |
|
| Q |
419 |
accatctgtg |
428 |
Q |
| |
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|||||||||| |
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|
| T |
36677073 |
accatctgtg |
36677082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 138; E-Value: 6e-72
Query Start/End: Original strand, 31 - 252
Target Start/End: Original strand, 36673930 - 36674151
Alignment:
| Q |
31 |
aatcgttgtttctaaaaggatctgccttttaaacaaatgagagtcgaatagtctcttaatagctagtaattgaccattaggcagaaatccttggtacatc |
130 |
Q |
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|||||||||||| ||||||| |||||||||||| | ||||||| |||| |||||||||||| ||||| ||||||||||| |||||||||||||||||| |
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| T |
36673930 |
aatcgttgtttccaaaaggaactgccttttaaatagccgagagtcaaatattctcttaatagccagtaactgaccattaggaagaaatccttggtacatc |
36674029 |
T |
|
| Q |
131 |
attcccatctttcctaccccaatggcattgtccacagcaaaacaatcggttgcgtcacgcagttcttccaaccatattgttgaatttagtctctccatta |
230 |
Q |
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|||||||||||||||||||||||||||||||| ||||| |||||||| |||||||||| |||||| ||||||||||||||| || | ||||||||||||| |
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| T |
36674030 |
attcccatctttcctaccccaatggcattgtcgacagcgaaacaatcagttgcgtcacacagttcatccaaccatattgttaaagtcagtctctccatta |
36674129 |
T |
|
| Q |
231 |
gtatagagatctgtggatgcat |
252 |
Q |
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|||||| |||||||| |||||| |
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| T |
36674130 |
gtatagtgatctgtgaatgcat |
36674151 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 19 - 214
Target Start/End: Original strand, 36684346 - 36684541
Alignment:
| Q |
19 |
gtacctactcataatcgttgtttctaaaaggatctgccttttaaacaaatgagagtcgaatagtctcttaatagctagtaattgaccattaggcagaaat |
118 |
Q |
| |
|
||||||||||||||| |||||||||||||||| |||||||| ||| | | || ||| |||||||||||| |||||||| |||||||| || ||| | |
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|
| T |
36684346 |
gtacctactcataatagttgtttctaaaaggaactgcctttcaaaaagacgatagttagatagtctcttaacggctagtaactgaccatttggtagattt |
36684445 |
T |
|
| Q |
119 |
ccttggtacatcattcccatctttcctaccccaatggcattgtccacagcaaaacaatcggttgcgtcacgcagttcttccaaccatattgttgaa |
214 |
Q |
| |
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|| || |||||||||||||||||||| ||||||||||| ||||| | ||||||||| ||||||| ||| || |||||||| ||||||||||||||| |
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| T |
36684446 |
ccctgatacatcattcccatctttcccaccccaatggcgttgtctatagcaaaacagtcggttgtgtcccggagttcttctaaccatattgttgaa |
36684541 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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