View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3035_low_3 (Length: 375)

Name: NF3035_low_3
Description: NF3035
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3035_low_3
NF3035_low_3
[»] chr2 (1 HSPs)
chr2 (10-359)||(42903079-42903449)


Alignment Details
Target: chr2 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 10 - 359
Target Start/End: Original strand, 42903079 - 42903449
Alignment:
Q  10 catcatcattcttttagcttgacatgaagaggaatctgtat----taattgtaacagaaattagcatgatgaagatgatgattgcatatatatatccttt 105  Q
    |||||||||||||||||||||||||||||||||||||||||    ||||||||||||||||||||||||||||||||||||||||||||  |||||||||    
T  42903079 catcatcattcttttagcttgacatgaagaggaatctgtatatattaattgtaacagaaattagcatgatgaagatgatgattgcatat--atatccttt 42903176  T
Q  106 tgtcaatttcatgatatctttgtcggagataggaaaggtgtagagacagctaacaacgtaggaaagggagatgagactagttagttagctaggtagagtt 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42903177 tgtcaatttcatgatatctttgtcggagataggaaaggtgtagagacagctaacaacgtaggaaagggagatgagactagttagttagctaggtagagtt 42903276  T
Q  206 ggc----------ataagtgctcttcccccatggcctctaactttctgattagctaggtattttgcttttcacttctttctttatgtcaaga-------- 287  Q
    |||          |||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||            
T  42903277 ggcatatatatatataagtgctctt-ccccatggcctctaactttctaattagctaggtattttgcttttcacttctttctttatgtcaagacaagacaa 42903375  T
Q  288 --caagaggctcaattaattatattcagtcgtgattttataacttttccatctttatataattttatacaaaaa 359  Q
      ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42903376 ggcaagaagctcaattaattatattcagtcgtgattttataacttttccatctttatataattttatacaaaaa 42903449  T

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