View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3036-Insertion-12 (Length: 116)
Name: NF3036-Insertion-12
Description: NF3036
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3036-Insertion-12 |
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| [»] chr6 (3 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 104; Significance: 2e-52; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 104; E-Value: 2e-52
Query Start/End: Original strand, 5 - 116
Target Start/End: Original strand, 12072182 - 12072293
Alignment:
| Q |
5 |
acaccaaggaagagaggtattgtttgcaacatttctaaagaaatcccatgaagcacgtcttcttctaccctcgggaaaaccataatatccagttagttgc |
104 |
Q |
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| T |
12072182 |
acaccaaggaagagaggtattgttcgcaacatttctaaagaaatcccatgaagcacgtcttcttctaccctcgggaaaaccataatatccagttagttgc |
12072281 |
T |
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| Q |
105 |
cattttcattta |
116 |
Q |
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||||||| |||| |
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| T |
12072282 |
cattttccttta |
12072293 |
T |
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Target: chr6; HSP #2
Raw Score: 86; E-Value: 1e-41
Query Start/End: Original strand, 11 - 116
Target Start/End: Original strand, 12065465 - 12065570
Alignment:
| Q |
11 |
aggaagagaggtattgtttgcaacatttctaaagaaatcccatgaagcacgtcttcttctaccctcgggaaaaccataatatccagttagttgccatttt |
110 |
Q |
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|||||||||||||||||| | ||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12065465 |
aggaagagaggtattgttcgaaacatttctaaagaaatcccatgaagcgcctcttcttctaccctcgggaaaaccataatatccagttagttgccatttt |
12065564 |
T |
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| Q |
111 |
cattta |
116 |
Q |
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| T |
12065565 |
ccttta |
12065570 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 53; E-Value: 7e-22
Query Start/End: Original strand, 5 - 109
Target Start/End: Original strand, 25908012 - 25908116
Alignment:
| Q |
5 |
acaccaaggaagagaggtattgtttgcaacatttctaaagaaatcccatgaagcacgtcttcttctaccctcgggaaaaccataatatccagttagttgc |
104 |
Q |
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| T |
25908012 |
acaccaaggaagagaggtattattcggaagatttctcaaaaaatcccacgaagcacgccttcttctaccctcgggaaatccataataacctgtaaattgc |
25908111 |
T |
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| Q |
105 |
cattt |
109 |
Q |
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||||| |
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| T |
25908112 |
cattt |
25908116 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 57; Significance: 3e-24; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 57; E-Value: 3e-24
Query Start/End: Original strand, 5 - 109
Target Start/End: Original strand, 23063010 - 23063114
Alignment:
| Q |
5 |
acaccaaggaagagaggtattgtttgcaacatttctaaagaaatcccatgaagcacgtcttcttctaccctcgggaaaaccataatatccagttagttgc |
104 |
Q |
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||||||||||||||||||||| || |||| |||||| || |||||||| |||||||| |||||||||||||||||||| |||||||| || || | |||| |
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| T |
23063010 |
acaccaaggaagagaggtattattcgcaagatttctcaaaaaatcccacgaagcacgccttcttctaccctcgggaaagccataataacctgtaaattgc |
23063109 |
T |
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| Q |
105 |
cattt |
109 |
Q |
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||||| |
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| T |
23063110 |
cattt |
23063114 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 49; Significance: 2e-19; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 49; E-Value: 2e-19
Query Start/End: Original strand, 5 - 97
Target Start/End: Complemental strand, 15229062 - 15228970
Alignment:
| Q |
5 |
acaccaaggaagagaggtattgtttgcaacatttctaaagaaatcccatgaagcacgtcttcttctaccctcgggaaaaccataatatccagt |
97 |
Q |
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|||||||||||||||| |||| || |||| |||||| | |||| ||||||||||||| |||||||||||||| ||||||||||||| ||||| |
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| T |
15229062 |
acaccaaggaagagagctattattcgcaagatttcttaggaaaacccatgaagcacgccttcttctaccctcaagaaaaccataataaccagt |
15228970 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.0000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.0000000006
Query Start/End: Original strand, 5 - 69
Target Start/End: Original strand, 16659786 - 16659850
Alignment:
| Q |
5 |
acaccaaggaagagaggtattgtttgcaacatttctaaagaaatcccatgaagcacgtcttcttc |
69 |
Q |
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|||||| ||||| |||||||||||||||| |||||| ||||||||| | ||||||| ||||||| |
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| T |
16659786 |
acaccatggaagtgaggtattgtttgcaagatttctcaagaaatcctaggaagcacaccttcttc |
16659850 |
T |
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