View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3036-Insertion-3 (Length: 877)
Name: NF3036-Insertion-3
Description: NF3036
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3036-Insertion-3 |
 | |
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| [»] chr1 (4 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 741; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 741; E-Value: 0
Query Start/End: Original strand, 7 - 877
Target Start/End: Original strand, 50384225 - 50385097
Alignment:
| Q |
7 |
aggaaacatgcataagaataataatatcactgaatgcgaaaggttggccacatcgttcttctccatatgcaaagaagtcaacattagcaacaaataagag |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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|
| T |
50384225 |
aggaaacatgcataagaataataatatcactgaatgtgaaaggttggccacatcgttcttctccatatgcaaagaagtcaacaatagcaacaaataagag |
50384324 |
T |
|
| Q |
107 |
caccaacatttgtttttctaaatcaataaatattcaattcagcaagttgctccatctcatttatacatacctcactacttctataaccataagtggcagc |
206 |
Q |
| |
|
| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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|
| T |
50384325 |
cgccaacatttgtttttctaaatttataaatattcaattcagcaagttgctccatctcatttatac----ctcactacttctataaccataagtggcagc |
50384420 |
T |
|
| Q |
207 |
aagtgcaagctagctagcta----ttgcaagaagnnnnnnnnnntat--cttcttgcaattcgcaatattatggcggtaggtaactccattggtgttcat |
300 |
Q |
| |
|
|||||||||||||||||||| |||||||||| ||| ||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
50384421 |
aagtgcaagctagctagctagctattgcaagaagaagaaaaaaatatatcttcttgcaattcgcaatattatggcggtaggtaattccattggtgttcat |
50384520 |
T |
|
| Q |
301 |
ggtttgggagacatgaagagtctcaccgtccaattcatcaccgggcgttggttcgtcatttttgcctcctttctaatcatggcagcggccggagccacct |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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|
| T |
50384521 |
ggtttgggagacatgaagagtctcaccgtccaattcatcaccgggcgttggttcgtcatttttgcctcctttctaatcatggcagcagccggagccacct |
50384620 |
T |
|
| Q |
401 |
acatgttcggtctatactccccagacataaaaacaacacttggctatgaccaaagtacactgaacctccttagttttttcaaagactttggtagcaacgt |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
50384621 |
acatgttcggtctatactccccagacataaaaacaacacttggctatgaccaaagtacactgaacctccttagttttttcaaagactttggtagcaacgt |
50384720 |
T |
|
| Q |
501 |
tggtgtcctttcaggactaatcaacgaactctatccaccttgggtagttttgacaataggtgctattctcaatttctttggttacttcatgatttagtta |
600 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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|
| T |
50384721 |
tggtgtcctttcaggactaatcaacgaactctatccaccttgggtagttttgacaataggtgctattctcaatttctttggttacttcatgatttggtta |
50384820 |
T |
|
| Q |
601 |
tcagttaccnnnnnnntagcaagaccacaagtttggcaaatgtgtctttacatttgtataggtgctaattctcagtcttttgcaaacactggttcacttg |
700 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
50384821 |
tcagttaccaaaaaaatagcaagaccacaagtttggcaaatgtgtctttacatttgtataggtgctaattctcagtcttttgcaaacactggttcacttg |
50384920 |
T |
|
| Q |
701 |
tgacttgtgttaagaatttccctgaatctcgcggcgcggttttgggaattcttaaaggctatgttggtctcagtggtgcaatcatcacacagctatactc |
800 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
50384921 |
tgacttgtgttaagaatttccctgaatctcgcggcgcggttttgggaattcttaaaggctatgttggtctcagtggtgcaatcatcacacagctttactc |
50385020 |
T |
|
| Q |
801 |
tgctatttattatgatgacacaaaggctttgattttgtttattggttggcttcctgctgctatttcatttgcttttc |
877 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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|
| T |
50385021 |
tgctatttattatgatgacacaaaggctttgattttgtttattggttggcttcctgctgctatttcgtttgcttttc |
50385097 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 447; E-Value: 0
Query Start/End: Original strand, 270 - 877
Target Start/End: Original strand, 50392909 - 50393516
Alignment:
| Q |
270 |
tatggcggtaggtaactccattggtgttcatggtttgggagacatgaagagtctcaccgtccaattcatcaccgggcgttggttcgtcatttttgcctcc |
369 |
Q |
| |
|
||||||||| ||||| |||||||||||||| ||||| |||||||||||||||||||| ||||||||||||||||| || ||||||||||||||||||||| |
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|
| T |
50392909 |
tatggcggttggtaattccattggtgttcacggtttaggagacatgaagagtctcactgtccaattcatcaccggacggtggttcgtcatttttgcctcc |
50393008 |
T |
|
| Q |
370 |
tttctaatcatggcagcggccggagccacctacatgttcggtctatactccccagacataaaaacaacacttggctatgaccaaagtacactgaacctcc |
469 |
Q |
| |
|
||||| ||||||||||| |||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||| ||||| ||||||| |
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|
| T |
50393009 |
tttcttatcatggcagcagccggagccacctacatgtttggtctatactccggcgacataaaaacaacacttggctatgaccaaagcacactaaacctcc |
50393108 |
T |
|
| Q |
470 |
ttagttttttcaaagactttggtagcaacgttggtgtcctttcaggactaatcaacgaactctatccaccttgggtagttttgacaataggtgctattct |
569 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||| |||||||||||||| || |
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|
| T |
50393109 |
ttagttttttcaaagattttggtagcaacgttggtgtccttgcaggactagtcaacgaactctatccaccttgggtagttttaacaataggtgctatact |
50393208 |
T |
|
| Q |
570 |
caatttctttggttacttcatgatttagttatcagttaccnnnnnnntagcaagaccacaagtttggcaaatgtgtctttacatttgtataggtgctaat |
669 |
Q |
| |
|
|| || ||||||||||| ||||||| ||||||||| ||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50393209 |
aaacttttttggttactttatgatttggttatcagtcaccaaaaaaatagcaagaccaaaagtttggcaaatgtgtctttacatttgtataggtgctaat |
50393308 |
T |
|
| Q |
670 |
tctcagtcttttgcaaacactggttcacttgtgacttgtgttaagaatttccctgaatctcgcggcgcggttttgggaattcttaaaggctatgttggtc |
769 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||| |
|
|
| T |
50393309 |
tctcagtcttttgcaaacactggttcacttgtgacttgtgttaagaatttccctgaatctcgcggagcggttttgggaattcttaaaggttatgttggtc |
50393408 |
T |
|
| Q |
770 |
tcagtggtgcaatcatcacacagctatactctgctatttattatgatgacacaaaggctttgattttgtttattggttggcttcctgctgctatttcatt |
869 |
Q |
| |
|
| ||||||||||| ||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| || |
|
|
| T |
50393409 |
ttagtggtgcaataatcacacagctttactctgctatttactatgatgacacaaaggctttgattttgtttataggttggcttcctgctgctatttcttt |
50393508 |
T |
|
| Q |
870 |
tgcttttc |
877 |
Q |
| |
|
|||||||| |
|
|
| T |
50393509 |
tgcttttc |
50393516 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 289 - 877
Target Start/End: Original strand, 50389654 - 50390242
Alignment:
| Q |
289 |
attggtgttcatggtttgggagacatgaagagtctcaccgtccaattcatcaccgggcgttggttcgtcatttttgcctcctttctaatcatggcagcgg |
388 |
Q |
| |
|
||||||||||||| || |||||||||||||||||||||||||||| |||||||||| || ||||| ||||||||||||||||||||||||||| | || | |
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|
| T |
50389654 |
attggtgttcatgattggggagacatgaagagtctcaccgtccaagtcatcaccggacggtggtttgtcatttttgcctcctttctaatcatgtcggctg |
50389753 |
T |
|
| Q |
389 |
ccggagccacctacatgttcggtctatactccccagacataaaaacaacacttggctatgaccaaagtacactgaacctccttagttttttcaaagactt |
488 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||| ||||| |||||||||||||||||||||| || |
|
|
| T |
50389754 |
ccggagccacctacatgttcggtctatactccagcgacataaaagaaacacttggctatgaccaaagcacactagacctccttagttttttcaaagattt |
50389853 |
T |
|
| Q |
489 |
tggtagcaacgttggtgtcctttcaggactaatcaacgaactctatccaccttgggtagttttgacaataggtgctattctcaatttctttggttacttc |
588 |
Q |
| |
|
||||||||| |||||| ||||| ||||||||||||||||| ||| |||||||||||||||||| ||||||||||||| || |||||||||||||||||| |
|
|
| T |
50389854 |
tggtagcaatgttggtatccttgcaggactaatcaacgaaatctctccaccttgggtagttttagcaataggtgctatacttaatttctttggttacttc |
50389953 |
T |
|
| Q |
589 |
atgatttagttatcagttaccnnnnnnntagcaagaccacaagtttggcaaatgtgtctttacatttgtataggtgctaattctcagtcttttgcaaaca |
688 |
Q |
| |
|
||||||| |||||| | || | ||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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|
| T |
50389954 |
atgatttggttatccataacaaaaaaaattgcaagaccacatgtttggcaaatgtgtctttacatttgcataggtgctaattctcagtcttttgcaaaca |
50390053 |
T |
|
| Q |
689 |
ctggttcacttgtgacttgtgttaagaatttccctgaatctcgcggcgcggttttgggaattcttaaaggctatgttggtctcagtggtgcaatcatcac |
788 |
Q |
| |
|
| ||||||||||| |||||||||||||||||||| ||||||||||| || |||||||||||||| ||||| ||| ||||||| |||||||| |||||||| |
|
|
| T |
50390054 |
ccggttcacttgttacttgtgttaagaatttccccgaatctcgcggagctgttttgggaattctaaaaggatatcttggtcttagtggtgctatcatcac |
50390153 |
T |
|
| Q |
789 |
acagctatactctgctatttattatgatgacacaaaggctttgattttgtttattggttggcttcctgctgctatttcatttgcttttc |
877 |
Q |
| |
|
||| || |||||||||||||||||| ||||| ||||||||||||||||| |||| |||||||||||||| ||||||||||| ||||||| |
|
|
| T |
50390154 |
acaactttactctgctatttattataatgactcaaaggctttgattttgcttataggttggcttcctgccgctatttcattcgcttttc |
50390242 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 141; E-Value: 2e-73
Query Start/End: Original strand, 361 - 866
Target Start/End: Original strand, 50406613 - 50407118
Alignment:
| Q |
361 |
tttgcctcctttctaatcatggcagcggccggagccacctacatgttcggtctatactccccagacataaaaacaacacttggctatgaccaaagtacac |
460 |
Q |
| |
|
||||| || |||||||||||| |||| | ||||||||||||||||| ||||| ||||| |||||||||| | | | ||||||||||| || | |
|
|
| T |
50406613 |
tttgcttcttttctaatcatgtcagcttcaggagccacctacatgtttggtctttactctagtaccataaaaacatccttagcctatgaccaaacaactc |
50406712 |
T |
|
| Q |
461 |
tgaacctccttagttttttcaaagactttggtagcaacgttggtgtcctttcaggactaatcaacgaactctatccaccttgggtagttttgacaatagg |
560 |
Q |
| |
|
| |||||||||||||| ||||||||||| ||| ||||| ||||||| | || || ||||||| ||| || ||||||| || ||| | |||| || |
|
|
| T |
50406713 |
ttaacctccttagtttcttcaaagacttaggtggcaaccttggtgttttctctggcttaatcaatgaaatcacaccaccttatgttgttcttgcaattgg |
50406812 |
T |
|
| Q |
561 |
tgctattctcaatttctttggttacttcatgatttagttatcagttaccnnnnnnntagcaagaccacaagtttggcaaatgtgtctttacatttgtata |
660 |
Q |
| |
|
| | |||| || |||||||||||||| ||||| | |||| |||| || || ||| ||| |||||||||||||||||||||||||||||||| |
|
|
| T |
50406813 |
ttcccttcttaacttctttggttactttatgatatggttagcagtgactaaaaaaataccaaaaccgaaagtttggcaaatgtgtctttacatttgtata |
50406912 |
T |
|
| Q |
661 |
ggtgctaattctcagtcttttgcaaacactggttcacttgtgacttgtgttaagaatttccctgaatctcgcggcgcggttttgggaattcttaaaggct |
760 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||| ||| |||| || | || ||||| ||| | ||||| | |
|
|
| T |
50406913 |
ggtgctaattctcagtctttttcaaacactggttcacttgttacttgtgttaagaatttccccgaaactcgtggtgttgtgttggggattttaaaaggtt |
50407012 |
T |
|
| Q |
761 |
atgttggtctcagtggtgcaatcatcacacagctatactctgctatttattatgatgacacaaaggctttgattttgtttattggttggcttcctgctgc |
860 |
Q |
| |
|
|||||||||| |||||||| || |||||||| || || ||||||||||||| ||||||| |||| |||||||||||| |||||| ||||||||| ||||| |
|
|
| T |
50407013 |
atgttggtcttagtggtgctattatcacacaactttattctgctatttattttgatgacccaaaagctttgattttgcttattgcttggcttccagctgc |
50407112 |
T |
|
| Q |
861 |
tatttc |
866 |
Q |
| |
|
||||| |
|
|
| T |
50407113 |
aatttc |
50407118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 75; Significance: 4e-34; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 745 - 839
Target Start/End: Original strand, 24223903 - 24223997
Alignment:
| Q |
745 |
ggaattcttaaaggctatgttggtctcagtggtgcaatcatcacacagctatactctgctatttattatgatgacacaaaggctttgattttgtt |
839 |
Q |
| |
|
|||||||||||| | ||||||||||| |||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24223903 |
ggaattcttaaatgttatgttggtcttagtggtgcaatcatcacacaactttactctgctatttattatgatgacacaaaggctttgattttgtt |
24223997 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 629 - 723
Target Start/End: Original strand, 41333949 - 41334043
Alignment:
| Q |
629 |
aagtttggcaaatgtgtctttacatttgtataggtgctaattctcagtcttttgcaaacactggttcacttgtgacttgtgttaagaatttccct |
723 |
Q |
| |
|
|||||||||||||||||||||| ||||| || ||||| |||||||| ||||| | ||||| ||| | | || ||||||||||||||||||||| |
|
|
| T |
41333949 |
aagtttggcaaatgtgtctttatatttgcattggtgcaaattctcaaacttttactaacacaggtgctttagttacttgtgttaagaatttccct |
41334043 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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