View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3036-Insertion-4 (Length: 841)

Name: NF3036-Insertion-4
Description: NF3036
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3036-Insertion-4
NF3036-Insertion-4
[»] chr5 (15 HSPs)
chr5 (8-841)||(1639921-1640750)
chr5 (464-838)||(1071538-1071912)
chr5 (468-841)||(1053451-1053824)
chr5 (464-838)||(1065811-1066185)
chr5 (490-831)||(1044203-1044544)
chr5 (464-838)||(1058719-1059093)
chr5 (479-830)||(1033817-1034168)
chr5 (464-838)||(1046779-1047156)
chr5 (112-186)||(1638600-1638674)
chr5 (40-80)||(3780976-3781016)
chr5 (40-80)||(5787475-5787515)
chr5 (40-80)||(21344553-21344593)
chr5 (40-80)||(40914109-40914149)
chr5 (51-80)||(25837622-25837651)
chr5 (51-80)||(38507960-38507989)
[»] chr3 (15 HSPs)
chr3 (40-105)||(55198679-55198743)
chr3 (36-80)||(29726378-29726422)
chr3 (36-80)||(29726470-29726514)
chr3 (36-80)||(29726562-29726606)
chr3 (47-80)||(7328747-7328780)
chr3 (551-616)||(12121342-12121407)
chr3 (40-80)||(14626732-14626772)
chr3 (40-80)||(29726286-29726326)
chr3 (40-80)||(32956414-32956454)
chr3 (40-80)||(46967561-46967601)
chr3 (40-79)||(39530500-39530539)
chr3 (37-80)||(54008311-54008354)
chr3 (51-80)||(24312962-24312991)
chr3 (51-80)||(37331703-37331732)
chr3 (40-81)||(43883855-43883896)
[»] chr8 (2 HSPs)
chr8 (40-80)||(41569605-41569645)
chr8 (40-78)||(17922147-17922185)
[»] chr4 (9 HSPs)
chr4 (53-105)||(36721815-36721864)
chr4 (40-81)||(48088006-48088047)
chr4 (40-78)||(55616920-55616958)
chr4 (40-78)||(55624224-55624262)
chr4 (51-80)||(39923924-39923953)
chr4 (40-77)||(46495638-46495675)
chr4 (40-81)||(48088098-48088139)
chr4 (51-80)||(49632324-49632353)
chr4 (40-81)||(51394094-51394135)
[»] scaffold0136 (1 HSPs)
scaffold0136 (36-80)||(22548-22592)
[»] chr7 (8 HSPs)
chr7 (40-80)||(5082672-5082712)
chr7 (40-80)||(25099532-25099572)
chr7 (40-80)||(25250153-25250193)
chr7 (40-80)||(26154019-26154059)
chr7 (40-80)||(42644171-42644211)
chr7 (51-80)||(5639661-5639690)
chr7 (51-80)||(36399902-36399931)
chr7 (51-80)||(39976051-39976080)
[»] chr6 (2 HSPs)
chr6 (40-80)||(4156443-4156483)
chr6 (45-78)||(28542397-28542430)
[»] chr2 (4 HSPs)
chr2 (40-80)||(3463254-3463294)
chr2 (40-80)||(12017755-12017795)
chr2 (40-80)||(33363663-33363703)
chr2 (40-80)||(42230518-42230558)
[»] scaffold0001 (1 HSPs)
scaffold0001 (551-618)||(65866-65933)
[»] chr1 (3 HSPs)
chr1 (50-80)||(37215178-37215208)
chr1 (38-80)||(40094322-40094364)
chr1 (51-80)||(17622770-17622799)
[»] scaffold0305 (1 HSPs)
scaffold0305 (51-80)||(16890-16919)


Alignment Details
Target: chr5 (Bit Score: 781; Significance: 0; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 781; E-Value: 0
Query Start/End: Original strand, 8 - 841
Target Start/End: Original strand, 1639921 - 1640750
Alignment:
Q  8 gaagaagaatatgaataatatgttatacaaactacttcctccatctttaaatataagcaaaattgactttttatttaatgatgtatgtggtccatattgg 107  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||    
T  1639921 gaagaagaatatgaataatatgttatacaaattacttcctccatctttaaatacaagcaaaattaactttttatttaatgatgtatgtggtccatattgg 1640020  T
Q  108 taagtgtattatggatacataaattgaaaacatggggcatatcaccataaaggatgaatataatcatgagtttctctcagaattgaggaagcaattgaaa 207  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1640021 taagtgtattatggatacataaattgaaaacatgggacatatcaccataaaggatgaatataatcatgagtttctctcagaattgaggaagcaattgaaa 1640120  T
Q  208 tctttgtcagaattctacatcctcaaagacaataaaagctgaaattttggacttggagaaactataaactccaagtatatatatagagtactcgagggta 307  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    |||||||||||||||||    
T  1640121 tctttgtcagaattctacatcctcaaacacaataaaagctgaaattttggacttggagaaactataaactccaagtata----tagagtactcgagggta 1640216  T
Q  308 tgtaatgaatatttatcgatattaattttaaaactaaaagttggagtttgagaaacttgtaaataggattaaagctgcaatgattaagtagtattatagt 407  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1640217 tgtaatgaatatttatcgatattatttttaaaactaaaagttggagtttgagaaacttgtaaataggattaaagctgcaatgattaagtagtattatagt 1640316  T
Q  408 atattggatcattaaatttaaggccttaactaatgtccaaaactatagtttaacccagaaaagggtaatctgtataaccgagaaccggatcagatgtgta 507  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||    
T  1640317 atattggatcattaaatttaaggccttaactaatgtccaaaactatagtttaaccaagaaaagggtagtctgtataaccgagaaccggatcagatgtgta 1640416  T
Q  508 gaatgtttcccggttatacttgttgagaggagcatcgagcgcgaatctctttggtaaatctggattagatataaacaagcgaccataagcaacaagatct 607  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1640417 gaatgtttcccggttatacttgttgagaggagcatcgagcgcgaatctctttggtaaatctggattagatataaacaagcgaccataagcaacaagatct 1640516  T
Q  608 gtcttattttcaactatggcatcaatcccatcttgtcgcgaatagcctccggcaactataaaagtgccattgaaggcttttctcattggcaccaagctgt 707  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  1640517 gtcttattttcaactatggcatcaatcccatcttgtcgcgaatagcctccggcaactataaaagttccattgaaggcttttctcattggcaccaagctgt 1640616  T
Q  708 gaagacattcaactttttcagtaatagttttcattcttggttccaccatgtgacagtaaagaatattgtatttactgagggcattaaccatataaagccc 807  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1640617 gaagacattcaactttttcagtaatagttttcattcttggttccaccatgtgacagtaaagaatattgtatttactgagggcattaaccatataaagccc 1640716  T
Q  808 caattcttcaggattggagtctccacattctcca 841  Q
    ||||||||||||||||||||||||||||||||||    
T  1640717 caattcttcaggattggagtctccacattctcca 1640750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 139; E-Value: 3e-72
Query Start/End: Original strand, 464 - 838
Target Start/End: Complemental strand, 1071912 - 1071538
Alignment:
Q  464 agaaaagggtaatctgtataaccgagaaccggatcagatgtgtagaatgtttcccggttatacttgttgagaggagcatcgagcgcgaatctctttggta 563  Q
    ||||||||||| || |||||||| ||||| ||||||||   ||| ||||| |||| |||||||||||| ||||||||||| || || ||||||||||| |    
T  1071912 agaaaagggtagtcagtataacctagaactggatcagaaacgtaaaatgtctccctgttatacttgtttagaggagcatcaagtgcaaatctctttggca 1071813  T
Q  564 aatctggattagatataaacaagcgaccataagcaacaagatctgtcttattttcaactatggcatcaatcccatcttgtcgcgaatagcctccggcaac 663  Q
    |||||||||||| ||  ||||| ||||||||  |||| || |||| | | |||||| |||||||||  |||||||| |||||    || ||||| |||||    
T  1071812 aatctggattagctaagaacaaacgaccatatacaactaggtctgccctgttttcagctatggcattgatcccatcatgtcggtcgtaacctcctgcaac 1071713  T
Q  664 tataaaagtgccattgaaggcttttctcattggcaccaagctgtgaagacattcaactttttcagtaatagttttcattcttggttccaccatgtgacag 763  Q
     || |||||||| |||||||| |||||||||||||| | |||||   | ||||||  |||||||  || |||| |||||||||||||||||||||||||     
T  1071712 catgaaagtgcctttgaaggcctttctcattggcacaaggctgtcggggcattcagttttttcaccaacagttatcattcttggttccaccatgtgacaa 1071613  T
Q  764 taaagaatattgtatttactgagggcattaaccatataaagccccaattcttcaggattggagtctccacattct 838  Q
    |||||||||  ||||||| |||||||||||||||||||||| |||||||||| ||| ||||||||||||||||||    
T  1071612 taaagaataccgtatttattgagggcattaaccatataaagtcccaattctttagggttggagtctccacattct 1071538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 134; E-Value: 3e-69
Query Start/End: Original strand, 468 - 841
Target Start/End: Complemental strand, 1053824 - 1053451
Alignment:
Q  468 aagggtaatctgtataaccgagaaccggatcagatgtgtagaatgtttcccggttatacttgttgagaggagcatcgagcgcgaatctctttggtaaatc 567  Q
    ||||||| || |||||||| | ||| |||||||| ||||||||||| ||||  ||||||||||| ||||||||||  || || |||||||||||||||||    
T  1053824 aagggtagtcagtataacctataactggatcagaagtgtagaatgtctccctattatacttgttaagaggagcattaagtgcaaatctctttggtaaatc 1053725  T
Q  568 tggattagatataaacaagcgaccataagcaacaagatctgtcttattttcaactatggcatcaatcccatcttgtcgcgaatagcctccggcaactata 667  Q
    |||||||||||| ||||| ||||||||||||| |||||||| | |||||||| |||| ||||  || ||||||||||    ||||||||| | ||| |||    
T  1053724 tggattagatatgaacaaacgaccataagcaataagatctgccctattttcagctatagcattgattccatcttgtctttcatagcctccagtaaccata 1053625  T
Q  668 aaagtgccattgaaggcttttctcattggcaccaagctgtgaagacattcaactttttcagtaatagttttcattcttggttccaccatgtgacagtaaa 767  Q
    ||||| ||||||||  | ||||| |||| ||||||||| | | ||||||||  ||| |||  || | ||| |||||||||||||||||| ||||| ||||    
T  1053624 aaagttccattgaaaacctttcttattgacaccaagctataatgacattcagttttctcatcaagaatttccattcttggttccaccatatgacaataaa 1053525  T
Q  768 gaatattgtatttactgagggcattaaccatataaagccccaattcttcaggattggagtctccacattctcca 841  Q
    |||||   |||||| |||||||||| ||||||||||| ||||||||||  ||||| ||||||||||| ||||||    
T  1053524 gaataccatatttattgagggcattcaccatataaagtcccaattcttggggatttgagtctccacaatctcca 1053451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 131; E-Value: 2e-67
Query Start/End: Original strand, 464 - 838
Target Start/End: Complemental strand, 1066185 - 1065811
Alignment:
Q  464 agaaaagggtaatctgtataaccgagaaccggatcagatgtgtagaatgtttcccggttatacttgttgagaggagcatcgagcgcgaatctctttggta 563  Q
    ||||| ||||| || |||||||| ||||| ||||||||  ||||||| || |||| |||||| ||||| ||||||||||| || || |||||||||||||    
T  1066185 agaaaggggtagtcagtataacctagaactggatcagaaatgtagaacgtctccctgttatatttgttcagaggagcatcaagtgcaaatctctttggta 1066086  T
Q  564 aatctggattagatataaacaagcgaccataagcaacaagatctgtcttattttcaactatggcatcaatcccatcttgtcgcgaatagcctccggcaac 663  Q
    |||||||||||| ||  ||||| ||||||||  ||||||| |||| | | |||||| |||||||||  |||||||| |||||    || ||||| |||||    
T  1066085 aatctggattagctaagaacaaacgaccatatacaacaaggtctgccctgttttcagctatggcattgatcccatcatgtcggtcgtaacctcctgcaac 1065986  T
Q  664 tataaaagtgccattgaaggcttttctcattggcaccaagctgtgaagacattcaactttttcagtaatagttttcattcttggttccaccatgtgacag 763  Q
     || |||||||| |||||||| |||||||||||||| | |||||   | ||||||  |||||||  || |||||||||||||||||||||||| ||||||    
T  1065985 catgaaagtgcctttgaaggcctttctcattggcacaaggctgtcggggcattcagttttttcaccaacagttttcattcttggttccaccatatgacag 1065886  T
Q  764 taaagaatattgtatttactgagggcattaaccatataaagccccaattcttcaggattggagtctccacattct 838  Q
    |||||||||   |||||| |||||||||| ||||||||||| |||||||| |  || ||||||||||||||||||    
T  1065885 taaagaataccatatttattgagggcattgaccatataaagtcccaattcattggggttggagtctccacattct 1065811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 118; E-Value: 9e-60
Query Start/End: Original strand, 490 - 831
Target Start/End: Complemental strand, 1044544 - 1044203
Alignment:
Q  490 aaccggatcagatgtgtagaatgtttcccggttatacttgttgagaggagcatcgagcgcgaatctctttggtaaatctggattagatataaacaagcga 589  Q
    ||||||||||||  |||||||||| ||||  ||||||||||||||||||||||  || || ||||||||||| ||||||||||| | ||  ||||| |||    
T  1044544 aaccggatcagaaatgtagaatgtctccctattatacttgttgagaggagcattaagtgcaaatctctttggcaaatctggatttgctaagaacaaacga 1044445  T
Q  590 ccataagcaacaagatctgtcttattttcaactatggcatcaatcccatcttgtcgcgaatagcctccggcaactataaaagtgccattgaaggcttttc 689  Q
    |||||| | |||||||||| ||| |||||| |||| ||||| ||||| |||||||    ||||||||| ||| | || |||| ||||||||| || ||||    
T  1044444 ccataaactacaagatctgccttgttttcagctatagcatcgatcccgtcttgtctgtcatagcctcctgcagccatgaaagagccattgaaagcctttc 1044345  T
Q  690 tcattggcaccaagctgtgaagacattcaactttttcagtaatagttttcattcttggttccaccatgtgacagtaaagaatattgtatttactgagggc 789  Q
    ||||||||||||  |||| | | | |||||   |||||| |   | ||| |||||||||||||||||||||||||||||||||||||| ||| |||||||    
T  1044344 tcattggcaccagactgtaagggctttcaatcgtttcagaagctgattttattcttggttccaccatgtgacagtaaagaatattgtacttattgagggc 1044245  T
Q  790 attaaccatataaagccccaattcttcaggattggagtctcc 831  Q
    ||||||||||| ||| |||||||| |  ||||||||||||||    
T  1044244 attaaccatatgaagtcccaattcattgggattggagtctcc 1044203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 115; E-Value: 6e-58
Query Start/End: Original strand, 464 - 838
Target Start/End: Complemental strand, 1059093 - 1058719
Alignment:
Q  464 agaaaagggtaatctgtataaccgagaaccggatcagatgtgtagaatgtttcccggttatacttgttgagaggagcatcgagcgcgaatctctttggta 563  Q
    ||||||||||| || |||||||| | ||| ||||| || |||||||||||  ||| |||||||||||| ||||||||||  || || |||||||| || |    
T  1059093 agaaaagggtagtcagtataacctataactggatctgaagtgtagaatgtcgccctgttatacttgtttagaggagcattaagtgcaaatctcttcggca 1058994  T
Q  564 aatctggattagatataaacaagcgaccataagcaacaagatctgtcttattttcaactatggcatcaatcccatcttgtcgcgaatagcctccggcaac 663  Q
    |||||||||||| ||  ||||| ||||||||  ||||||| |||||| |||||||| |||||||||  |||||||| | |||    || ||||| ||| |    
T  1058993 aatctggattagctaagaacaaacgaccatatacaacaaggtctgtcctattttcagctatggcattgatcccatcatttcggtcgtaacctcctgcagc 1058894  T
Q  664 tataaaagtgccattgaaggcttttctcattggcaccaagctgtgaagacattcaactttttcagtaatagttttcattcttggttccaccatgtgacag 763  Q
     |  |||||||| |||||||| |||||||| ||||| | |||||||   ||||||| | ||||| ||| |||||||||||||||||||||||  ||||||    
T  1058893 caggaaagtgcctttgaaggcctttctcatcggcacaaggctgtgagagcattcaattctttcattaacagttttcattcttggttccaccacatgacag 1058794  T
Q  764 taaagaatattgtatttactgagggcattaaccatataaagccccaattcttcaggattggagtctccacattct 838  Q
    |||||||||   |||||| ||||||||||| |||||||||| |||||||||   ||||| |||||| ||||||||    
T  1058793 taaagaataccatatttattgagggcattagccatataaagtcccaattctctgggattagagtctacacattct 1058719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 108; E-Value: 9e-54
Query Start/End: Original strand, 479 - 830
Target Start/End: Complemental strand, 1034168 - 1033817
Alignment:
Q  479 gtataaccgagaaccggatcagatgtgtagaatgtttcccggttatacttgttgagaggagcatcgagcgcgaatctctttggtaaatctggattagata 578  Q
    |||||||| | |||||||||||| ||||||||||| |||| |||||| || ||||||||||| |  || || |||||||| || ||||||||||| | ||    
T  1034168 gtataacctacaaccggatcagaagtgtagaatgtctccctgttatatttattgagaggagcgtttagtgcaaatctcttcggcaaatctggattcgcta 1034069  T
Q  579 taaacaagcgaccataagcaacaagatctgtcttattttcaactatggcatcaatcccatcttgtcgcgaatagcctccggcaactataaaagtgccatt 678  Q
      ||||| ||||||||| |||||||||||| | |||| ||  |||| ||||  |||||||||||||    ||| ||||| ||||| || ||||| |||||    
T  1034068 agaacaaacgaccataaacaacaagatctgccctattatctgctatagcattgatcccatcttgtctgtcataacctcccgcaaccatgaaagtaccatt 1033969  T
Q  679 gaaggcttttctcattggcaccaagctgtgaagacattcaactttttcagtaatagttttcattcttggttccaccatgtgacagtaaagaatattgtat 778  Q
    ||| || |||||||| |||||||  |||| | | | |||||   |||||  | | | ||| ||||||||||||||||||||||||||||||||||||||     
T  1033968 gaaagcctttctcatgggcaccagactgtaagggctttcaatcgtttcatcatttgattttattcttggttccaccatgtgacagtaaagaatattgtac 1033869  T
Q  779 ttactgagggcattaaccatataaagccccaattcttcaggattggagtctc 830  Q
    ||| |||||||||||||||||||||| |||||||||   |||||||||||||    
T  1033868 ttattgagggcattaaccatataaagtcccaattctgtgggattggagtctc 1033817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 464 - 838
Target Start/End: Complemental strand, 1047156 - 1046779
Alignment:
Q  464 agaaaagggtaatctgtataaccgagaaccggatcagatgtgtagaatgtttcccggttatacttgttgagaggagcatcgagcgcgaatctctttggta 563  Q
    ||||||||||| || |||||||| ||||| |||||||| ||| ||||||| |||   ||||||||||| || |||||||  || || ||||||||||| |    
T  1047156 agaaaagggtagtcggtataaccaagaactggatcagaagtgcagaatgtctccatattatacttgtttaggggagcattaagtgcaaatctctttggca 1047057  T
Q  564 aatctggattagatataaacaagcgaccataagcaacaagatctgtcttattttcaactatggcatcaatcccatcttgtcgcgaatagcctccggcaac 663  Q
    |||||||||||| ||| || || ||  | |||||||||||||||  | |||||||| |||| ||||  ||||| ||| |||    ||||| ||||| |||    
T  1047056 aatctggattagctatgaataaacggtcgtaagcaacaagatctaccctattttcagctatagcattgatcccgtctagtctttcatagcttccggtaac 1046957  T
Q  664 tataaaagtgccattgaaggcttttctcattggcaccaagctgtgaagacattcaactttttcagtaatagtt---ttcattcttggttccaccatgtga 760  Q
     || |||||||||||||| || ||||||| |||||||||| ||||||||||||    ||| |||  |||||||   ||  || ||  ||| ||||| |||    
T  1046956 catgaaagtgccattgaaagcctttctcactggcaccaagttgtgaagacattttgttttatcatcaatagtttcattacttattcattctaccatatga 1046857  T
Q  761 cagtaaagaatattgtatttactgagggcattaaccatataaagccccaattcttcaggattggagtctccacattct 838  Q
    || || ||||||   |||||| |||||||||||||||| |||||||||||| | |  ||||| |||||||||||||||    
T  1046856 caatacagaataccatatttattgagggcattaaccatgtaaagccccaatgccttcggatttgagtctccacattct 1046779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 112 - 186
Target Start/End: Original strand, 1638600 - 1638674
Alignment:
Q  112 tgtattatggatacataaattgaaaacatggggcatatcaccataaaggatgaatataatcatgagtttctctca 186  Q
    ||||||||| ||||||||||||||||| | ||  |||||||||||||||||| || |||| ||||||||| ||||    
T  1638600 tgtattatgaatacataaattgaaaacttcggaaatatcaccataaaggatgcatctaatgatgagtttccctca 1638674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 40 - 80
Target Start/End: Original strand, 3780976 - 3781016
Alignment:
Q  40 tacttcctccatctttaaatataagcaaaattgacttttta 80  Q
    |||| ||||| ||||||||||||||||||||||||||||||    
T  3780976 tactccctccgtctttaaatataagcaaaattgacttttta 3781016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 40 - 80
Target Start/End: Original strand, 5787475 - 5787515
Alignment:
Q  40 tacttcctccatctttaaatataagcaaaattgacttttta 80  Q
    |||| ||||| ||||||||||||||||||||||||||||||    
T  5787475 tactccctccgtctttaaatataagcaaaattgacttttta 5787515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 40 - 80
Target Start/End: Complemental strand, 21344593 - 21344553
Alignment:
Q  40 tacttcctccatctttaaatataagcaaaattgacttttta 80  Q
    |||| ||||| ||||||||||||||||||||||||||||||    
T  21344593 tactccctccgtctttaaatataagcaaaattgacttttta 21344553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 40 - 80
Target Start/End: Original strand, 40914109 - 40914149
Alignment:
Q  40 tacttcctccatctttaaatataagcaaaattgacttttta 80  Q
    |||||||||||| ||| ||||||||||||||||||||||||    
T  40914109 tacttcctccattttttaatataagcaaaattgacttttta 40914149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 51 - 80
Target Start/End: Complemental strand, 25837651 - 25837622
Alignment:
Q  51 tctttaaatataagcaaaattgacttttta 80  Q
    ||||||||||||||||||||||||||||||    
T  25837651 tctttaaatataagcaaaattgacttttta 25837622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 51 - 80
Target Start/End: Complemental strand, 38507989 - 38507960
Alignment:
Q  51 tctttaaatataagcaaaattgacttttta 80  Q
    ||||||||||||||||||||||||||||||    
T  38507989 tctttaaatataagcaaaattgacttttta 38507960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000005; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 40 - 105
Target Start/End: Complemental strand, 55198743 - 55198679
Alignment:
Q  40 tacttcctccatctttaaatataagcaaaattgactttttatttaatgatgtatgtggtccatatt 105  Q
    |||| ||||| | |||||||||||| |||||||||||| |||| ||||||||||||||||||||||    
T  55198743 tactccctccgtttttaaatataagtaaaattgactttatatt-aatgatgtatgtggtccatatt 55198679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 36 - 80
Target Start/End: Complemental strand, 29726422 - 29726378
Alignment:
Q  36 aaactacttcctccatctttaaatataagcaaaattgacttttta 80  Q
    |||||||| ||||| ||||||||||||||||||||||||||||||    
T  29726422 aaactactccctccgtctttaaatataagcaaaattgacttttta 29726378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 36 - 80
Target Start/End: Complemental strand, 29726514 - 29726470
Alignment:
Q  36 aaactacttcctccatctttaaatataagcaaaattgacttttta 80  Q
    |||||||| ||||| ||||||||||||||||||||||||||||||    
T  29726514 aaactactccctccgtctttaaatataagcaaaattgacttttta 29726470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 36 - 80
Target Start/End: Complemental strand, 29726606 - 29726562
Alignment:
Q  36 aaactacttcctccatctttaaatataagcaaaattgacttttta 80  Q
    |||||||| ||||| ||||||||||||||||||||||||||||||    
T  29726606 aaactactccctccgtctttaaatataagcaaaattgacttttta 29726562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 47 - 80
Target Start/End: Complemental strand, 7328780 - 7328747
Alignment:
Q  47 tccatctttaaatataagcaaaattgacttttta 80  Q
    ||||||||||||||||||||||||||||||||||    
T  7328780 tccatctttaaatataagcaaaattgacttttta 7328747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 551 - 616
Target Start/End: Original strand, 12121342 - 12121407
Alignment:
Q  551 aatctctttggtaaatctggattagatataaacaagcgaccataagcaacaagatctgtcttattt 616  Q
    |||||| |||| ||||||||||||| ||  ||||| ||||||||| |||||||||||| |||||||    
T  12121342 aatctcattggcaaatctggattagctaagaacaaacgaccataaacaacaagatctgccttattt 12121407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 40 - 80
Target Start/End: Complemental strand, 14626772 - 14626732
Alignment:
Q  40 tacttcctccatctttaaatataagcaaaattgacttttta 80  Q
    |||| ||||| ||||||||||||||||||||||||||||||    
T  14626772 tactccctccgtctttaaatataagcaaaattgacttttta 14626732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 40 - 80
Target Start/End: Original strand, 29726286 - 29726326
Alignment:
Q  40 tacttcctccatctttaaatataagcaaaattgacttttta 80  Q
    |||| ||||||| ||||||||||||||||||||||||||||    
T  29726286 tactccctccatgtttaaatataagcaaaattgacttttta 29726326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 40 - 80
Target Start/End: Original strand, 32956414 - 32956454
Alignment:
Q  40 tacttcctccatctttaaatataagcaaaattgacttttta 80  Q
    |||||||||| | ||||||||||||||||||||||||||||    
T  32956414 tacttcctccgtttttaaatataagcaaaattgacttttta 32956454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 40 - 80
Target Start/End: Complemental strand, 46967601 - 46967561
Alignment:
Q  40 tacttcctccatctttaaatataagcaaaattgacttttta 80  Q
    |||| ||||| ||||||||||||||||||||||||||||||    
T  46967601 tactccctccgtctttaaatataagcaaaattgacttttta 46967561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 79
Target Start/End: Complemental strand, 39530539 - 39530500
Alignment:
Q  40 tacttcctccatctttaaatataagcaaaattgacttttt 79  Q
    |||| ||||||| |||||||||||||||||||||||||||    
T  39530539 tactccctccatttttaaatataagcaaaattgacttttt 39530500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 80
Target Start/End: Complemental strand, 54008354 - 54008311
Alignment:
Q  37 aactacttcctccatctttaaatataagcaaaattgacttttta 80  Q
    ||||||| ||||| | ||||||||||||||||||||||||||||    
T  54008354 aactactccctccgtttttaaatataagcaaaattgacttttta 54008311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 51 - 80
Target Start/End: Complemental strand, 24312991 - 24312962
Alignment:
Q  51 tctttaaatataagcaaaattgacttttta 80  Q
    ||||||||||||||||||||||||||||||    
T  24312991 tctttaaatataagcaaaattgacttttta 24312962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 51 - 80
Target Start/End: Complemental strand, 37331732 - 37331703
Alignment:
Q  51 tctttaaatataagcaaaattgacttttta 80  Q
    ||||||||||||||||||||||||||||||    
T  37331732 tctttaaatataagcaaaattgacttttta 37331703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 81
Target Start/End: Original strand, 43883855 - 43883896
Alignment:
Q  40 tacttcctccatctttaaatataagcaaaattgactttttat 81  Q
    |||||||||||| |||||||||||| |||||||| |||||||    
T  43883855 tacttcctccatttttaaatataagtaaaattgattttttat 43883896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.00000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 40 - 80
Target Start/End: Complemental strand, 41569645 - 41569605
Alignment:
Q  40 tacttcctccatctttaaatataagcaaaattgacttttta 80  Q
    |||||||||| ||||||||||||||||||||||||||||||    
T  41569645 tacttcctccgtctttaaatataagcaaaattgacttttta 41569605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 40 - 78
Target Start/End: Original strand, 17922147 - 17922185
Alignment:
Q  40 tacttcctccatctttaaatataagcaaaattgactttt 78  Q
    |||||||||| ||||||||||||||||||||||| ||||    
T  17922147 tacttcctccgtctttaaatataagcaaaattgattttt 17922185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000003; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 53 - 105
Target Start/End: Complemental strand, 36721864 - 36721815
Alignment:
Q  53 tttaaatataagcaaaattgactttttatttaatgatgtatgtggtccatatt 105  Q
    |||||||||||||||||||||   |||||||||| ||||||||||||||||||    
T  36721864 tttaaatataagcaaaattga---tttatttaataatgtatgtggtccatatt 36721815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 40 - 81
Target Start/End: Original strand, 48088006 - 48088047
Alignment:
Q  40 tacttcctccatctttaaatataagcaaaattgactttttat 81  Q
    |||||||||| | |||||||||||||||||||||||||||||    
T  48088006 tacttcctccgtttttaaatataagcaaaattgactttttat 48088047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 40 - 78
Target Start/End: Complemental strand, 55616958 - 55616920
Alignment:
Q  40 tacttcctccatctttaaatataagcaaaattgactttt 78  Q
    |||| ||||||||||||||||||||||||||| ||||||    
T  55616958 tactccctccatctttaaatataagcaaaatttactttt 55616920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 40 - 78
Target Start/End: Complemental strand, 55624262 - 55624224
Alignment:
Q  40 tacttcctccatctttaaatataagcaaaattgactttt 78  Q
    |||| ||||||||||||||||||||||||||| ||||||    
T  55624262 tactccctccatctttaaatataagcaaaatttactttt 55624224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 51 - 80
Target Start/End: Complemental strand, 39923953 - 39923924
Alignment:
Q  51 tctttaaatataagcaaaattgacttttta 80  Q
    ||||||||||||||||||||||||||||||    
T  39923953 tctttaaatataagcaaaattgacttttta 39923924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 77
Target Start/End: Complemental strand, 46495675 - 46495638
Alignment:
Q  40 tacttcctccatctttaaatataagcaaaattgacttt 77  Q
    |||| ||||||| |||||||||||||||||||||||||    
T  46495675 tactccctccatttttaaatataagcaaaattgacttt 46495638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 81
Target Start/End: Complemental strand, 48088139 - 48088098
Alignment:
Q  40 tacttcctccatctttaaatataagcaaaattgactttttat 81  Q
    |||| ||||| | |||||||||||||||||||||||||||||    
T  48088139 tactccctccgtttttaaatataagcaaaattgactttttat 48088098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 51 - 80
Target Start/End: Original strand, 49632324 - 49632353
Alignment:
Q  51 tctttaaatataagcaaaattgacttttta 80  Q
    ||||||||||||||||||||||||||||||    
T  49632324 tctttaaatataagcaaaattgacttttta 49632353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 81
Target Start/End: Original strand, 51394094 - 51394135
Alignment:
Q  40 tacttcctccatctttaaatataagcaaaattgactttttat 81  Q
    |||||||||| | |||||||||||| ||||||||||||||||    
T  51394094 tacttcctccgtttttaaatataagtaaaattgactttttat 51394135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0136 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: scaffold0136
Description:

Target: scaffold0136; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 36 - 80
Target Start/End: Complemental strand, 22592 - 22548
Alignment:
Q  36 aaactacttcctccatctttaaatataagcaaaattgacttttta 80  Q
    |||||||| |||| || ||||||||||||||||||||||||||||    
T  22592 aaactactccctctatttttaaatataagcaaaattgacttttta 22548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000005; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 40 - 80
Target Start/End: Original strand, 5082672 - 5082712
Alignment:
Q  40 tacttcctccatctttaaatataagcaaaattgacttttta 80  Q
    |||| ||||| ||||||||||||||||||||||||||||||    
T  5082672 tactccctccgtctttaaatataagcaaaattgacttttta 5082712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 40 - 80
Target Start/End: Original strand, 25099532 - 25099572
Alignment:
Q  40 tacttcctccatctttaaatataagcaaaattgacttttta 80  Q
    |||| ||||| ||||||||||||||||||||||||||||||    
T  25099532 tactccctccgtctttaaatataagcaaaattgacttttta 25099572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 40 - 80
Target Start/End: Original strand, 25250153 - 25250193
Alignment:
Q  40 tacttcctccatctttaaatataagcaaaattgacttttta 80  Q
    |||| ||||||||||| ||||||||||||||||||||||||    
T  25250153 tactccctccatcttttaatataagcaaaattgacttttta 25250193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 40 - 80
Target Start/End: Complemental strand, 26154059 - 26154019
Alignment:
Q  40 tacttcctccatctttaaatataagcaaaattgacttttta 80  Q
    |||| ||||| ||||||||||||||||||||||||||||||    
T  26154059 tactccctccgtctttaaatataagcaaaattgacttttta 26154019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 40 - 80
Target Start/End: Complemental strand, 42644211 - 42644171
Alignment:
Q  40 tacttcctccatctttaaatataagcaaaattgacttttta 80  Q
    |||||||||| |||||||||||||| |||||||||||||||    
T  42644211 tacttcctccgtctttaaatataagtaaaattgacttttta 42644171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 51 - 80
Target Start/End: Complemental strand, 5639690 - 5639661
Alignment:
Q  51 tctttaaatataagcaaaattgacttttta 80  Q
    ||||||||||||||||||||||||||||||    
T  5639690 tctttaaatataagcaaaattgacttttta 5639661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 51 - 80
Target Start/End: Original strand, 36399902 - 36399931
Alignment:
Q  51 tctttaaatataagcaaaattgacttttta 80  Q
    ||||||||||||||||||||||||||||||    
T  36399902 tctttaaatataagcaaaattgacttttta 36399931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 51 - 80
Target Start/End: Original strand, 39976051 - 39976080
Alignment:
Q  51 tctttaaatataagcaaaattgacttttta 80  Q
    ||||||||||||||||||||||||||||||    
T  39976051 tctttaaatataagcaaaattgacttttta 39976080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000005; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 40 - 80
Target Start/End: Complemental strand, 4156483 - 4156443
Alignment:
Q  40 tacttcctccatctttaaatataagcaaaattgacttttta 80  Q
    |||| ||||||| ||||||||||||||||||||||||||||    
T  4156483 tactccctccatttttaaatataagcaaaattgacttttta 4156443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 78
Target Start/End: Complemental strand, 28542430 - 28542397
Alignment:
Q  45 cctccatctttaaatataagcaaaattgactttt 78  Q
    ||||| ||||||||||||||||||||||||||||    
T  28542430 cctccgtctttaaatataagcaaaattgactttt 28542397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000005; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 40 - 80
Target Start/End: Complemental strand, 3463294 - 3463254
Alignment:
Q  40 tacttcctccatctttaaatataagcaaaattgacttttta 80  Q
    |||| |||||||||||||||||||| |||||||||||||||    
T  3463294 tactccctccatctttaaatataagtaaaattgacttttta 3463254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 40 - 80
Target Start/End: Original strand, 12017755 - 12017795
Alignment:
Q  40 tacttcctccatctttaaatataagcaaaattgacttttta 80  Q
    |||| ||||| ||||||||||||||||||||||||||||||    
T  12017755 tactacctccgtctttaaatataagcaaaattgacttttta 12017795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 40 - 80
Target Start/End: Complemental strand, 33363703 - 33363663
Alignment:
Q  40 tacttcctccatctttaaatataagcaaaattgacttttta 80  Q
    |||| ||||| ||||||||||||||||||||||||||||||    
T  33363703 tactccctccgtctttaaatataagcaaaattgacttttta 33363663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 40 - 80
Target Start/End: Original strand, 42230518 - 42230558
Alignment:
Q  40 tacttcctccatctttaaatataagcaaaattgacttttta 80  Q
    |||| ||||| ||||||||||||||||||||||||||||||    
T  42230518 tactccctccgtctttaaatataagcaaaattgacttttta 42230558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 551 - 618
Target Start/End: Complemental strand, 65933 - 65866
Alignment:
Q  551 aatctctttggtaaatctggattagatataaacaagcgaccataagcaacaagatctgtcttattttc 618  Q
    ||||||||||| |||| |||||||| ||  ||| | ||||||||| |||||||||||| |||||||||    
T  65933 aatctctttggcaaatttggattagctaagaacgaacgaccataaacaacaagatctgccttattttc 65866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000008; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 50 - 80
Target Start/End: Original strand, 37215178 - 37215208
Alignment:
Q  50 atctttaaatataagcaaaattgacttttta 80  Q
    |||||||||||||||||||||||||||||||    
T  37215178 atctttaaatataagcaaaattgacttttta 37215208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 38 - 80
Target Start/End: Original strand, 40094322 - 40094364
Alignment:
Q  38 actacttcctccatctttaaatataagcaaaattgacttttta 80  Q
    |||||| ||||| | ||||||||||||||||||||||||||||    
T  40094322 actactccctccgtgtttaaatataagcaaaattgacttttta 40094364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 51 - 80
Target Start/End: Original strand, 17622770 - 17622799
Alignment:
Q  51 tctttaaatataagcaaaattgacttttta 80  Q
    ||||||||||||||||||||||||||||||    
T  17622770 tctttaaatataagcaaaattgacttttta 17622799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0305 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0305
Description:

Target: scaffold0305; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 51 - 80
Target Start/End: Complemental strand, 16919 - 16890
Alignment:
Q  51 tctttaaatataagcaaaattgacttttta 80  Q
    ||||||||||||||||||||||||||||||    
T  16919 tctttaaatataagcaaaattgacttttta 16890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University