View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3036-Insertion-5 (Length: 570)
Name: NF3036-Insertion-5
Description: NF3036
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3036-Insertion-5 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 460; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 460; E-Value: 0
Query Start/End: Original strand, 8 - 570
Target Start/End: Complemental strand, 7811197 - 7810624
Alignment:
| Q |
8 |
gttgatttatcattctcttgaaaacgataattcttggcctcaaatccttcaacttgctctcatcta-----ctaacttttgttgttcttgagttgctccg |
102 |
Q |
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| T |
7811197 |
gttgatttatcattctcttgaaaacaataatttttggcctcaaatccttcaacttgctctcatctcatctcctaacttttgttgttcttgagttgctccg |
7811098 |
T |
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| Q |
103 |
atgacgccttgacaacacctttctcaatcaaactcaaatattccttgtagtgaagcaagatctccagtaacttttccaaatgatcatagaagccatcaaa |
202 |
Q |
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| T |
7811097 |
atgacgccttgacaacacctttctcaatcaaactcaaatattccttgtagtgaagcaagatctccagtaacttttccaaatgatcatagaagccatcaaa |
7810998 |
T |
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| Q |
203 |
taatggaactgcaagttgcataaagttgcatgattcctccattgtttcatgaaaaagattgagaaagaacaatctttgagattgcatgtgtaacaaactt |
302 |
Q |
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| T |
7810997 |
taatggaactgcaagttgcat----------gattcctccattgtttcatgaaaaagattgagaaagaacaatctttgagattgcatgtgtaacaaactt |
7810908 |
T |
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| Q |
303 |
gcaaactgaaaacttatataagttattttggttctctaggttgaatcctcaaccagactctaataccaattgttaaaatcaaacttgatttcactcatct |
402 |
Q |
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| T |
7810907 |
gcaaactgaaaacttatataagttattttggttctctaggttgaatcctcaaccagactctaataccaattgttaaaatcaaacttgatttcactcatct |
7810808 |
T |
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| Q |
403 |
tattaaccatataatgcctttaaatattgtccacaatacaacaaaataca----------------actatggagtttaactagttactttacttgtttc |
486 |
Q |
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| T |
7810807 |
tattaaccatataatgcctttaaatattgtccacaatacaacaaaatacaactacaacaaaatacaactatggagtttaactagttactttacttgtttc |
7810708 |
T |
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| Q |
487 |
gcaagtaactatatatcttaatgaactaattaaattaagtcataagctagattactatattacggttaacgtattatgcatacc |
570 |
Q |
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| T |
7810707 |
gcaagtaactatatatcttaatgaactaattaaattaagtcataagctagattactatatgacggttaacgtattatgcatacc |
7810624 |
T |
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