View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3036-Insertion-6 (Length: 529)
Name: NF3036-Insertion-6
Description: NF3036
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3036-Insertion-6 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 476; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 476; E-Value: 0
Query Start/End: Original strand, 8 - 529
Target Start/End: Original strand, 2097568 - 2098086
Alignment:
| Q |
8 |
aaattgagtatagcaacaatgtttggtaaaatgattgtcaatgctgcgaaggacacagcacatgtaagaccgtacatgagtgagattggaaacaaggttt |
107 |
Q |
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| T |
2097568 |
aaattgagtatagcaacaatgtttggtaaaatgattgtcaacgctgcgaaggacacagcacatgtaagaccgtacatgagtgagattggaaacaaggttt |
2097667 |
T |
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| Q |
108 |
caatagtgatatgatctggtataagtaggatggaaaaaatccagagtaagaaaaatatcaaaactgcagctacaacccaaggagtatactgttttgcgaa |
207 |
Q |
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| T |
2097668 |
caatagtgatatgatctggtataag---gatggaaaaaatccaaagtaagaaaaatatcaaaactgcagctacaacccaaggagtatactgttttgcgaa |
2097764 |
T |
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| Q |
208 |
tagcgtttcgccaatctttgtgaacttgagtgttaccaatgcaaccaaaagtgcaaacattttgtaaatgatgtctcctaagtctttaatcacctctccc |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
2097765 |
tagcgtttcgccaatctttgtgaacttgagtgttaccaatgcaaccaaaagtgcaaacattttgtaaatgatgtctcctaagcctttaatcacctctccc |
2097864 |
T |
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| Q |
308 |
ttgaagttgcatttcctcatttccgcctctcctcctatttattcaggtgtttgcattacctcaatgatgataggatggtaaaactgttgtatcttttcaa |
407 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
2097865 |
ttgaagttgcatttcctcatttccgcctctcctcctattttttcaggtgtttgcatttcctcaatgatgataggatggtaaaactgttgtatcttttcat |
2097964 |
T |
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| Q |
408 |
tcatgatttcgtacttttatactagtacttctgtgtcgtcctccaattaaaaaacaaatactccattattagggtatctccaacccgtggtattacatta |
507 |
Q |
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| T |
2097965 |
tcatgatttcgtacttttatactagtacttctgtgtcgtcctccaattataaaacaaatactccattattagggtatctccaacccgtggtattacatta |
2098064 |
T |
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| Q |
508 |
ccaggaaagtcaccaacacggg |
529 |
Q |
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| T |
2098065 |
cgaggaaagtcaccaacacggg |
2098086 |
T |
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