View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3036-Insertion-7 (Length: 507)

Name: NF3036-Insertion-7
Description: NF3036
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3036-Insertion-7
NF3036-Insertion-7
[»] chr1 (1 HSPs)
chr1 (8-507)||(28240948-28241463)


Alignment Details
Target: chr1 (Bit Score: 422; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 422; E-Value: 0
Query Start/End: Original strand, 8 - 507
Target Start/End: Complemental strand, 28241463 - 28240948
Alignment:
Q  8 caatacacctttatatgagcaacgccggcatcaatattcctgttatttagtctacaacattattaccttattggtacataattttcaccactctcaaaaa 107  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  28241463 caatacacctttatatgaacaacgccggcatcaatattcctgttatttagtctacgacattattaccttattggtacataattttcaccactctcaaaaa 28241364  T
Q  108 tttccagct----------------tgttggtgagtgagagggggacgagccccaaccacagaaaaactagattaaaatcctctcaggcagcaaagttac 191  Q
    |||||||||                |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28241363 tttccagctacattgtcaattcttttgttggtgagtgagagggggacgagccccaaccacagaaaaactagattaaaatcctctcaggcagcaaagttac 28241264  T
Q  192 atgatgatcatccccgatgagggagttcgaactaaaggcaataacataattnnnnnnntctacaagttagagaaaggccaaactttgcaagactatctgc 291  Q
    ||||||| |||||||||||||||||||||||||||||||| ||||||||||       ||||||||||||||||||||||||||||||||||||||||||    
T  28241263 atgatgagcatccccgatgagggagttcgaactaaaggcagtaacataattaaaaaaatctacaagttagagaaaggccaaactttgcaagactatctgc 28241164  T
Q  292 aatttcgtcagcctctctaagaacatagttaatatgagaggtatcaaaactttttgtcctctcttcaattctttgaacaatcccaaatcaatcgtgggac 391  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28241163 aatttcgtcagcctctctaagaacatagttaatatgagaggtatcagaactttttgtcctctcttcaattctttgaacaatcccaaatcaatcgtgggac 28241064  T
Q  392 tgaacacatcaattgttaatgacactgacagcaagcaataacccagagttctgcttgaatagaggaaacaaccatttgcatctctagactctagcaatgc 491  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28241063 tgaacacatcaattgttaatgacactgacagcaagcaataacccagagttctgcttgaatagaggaaacaaccatttgcatctctagactctagcaatgc 28240964  T
Q  492 ctccacatgctaccgg 507  Q
    ||||||||||||||||    
T  28240963 ctccacatgctaccgg 28240948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University