View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3036-Insertion-8 (Length: 451)
Name: NF3036-Insertion-8
Description: NF3036
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3036-Insertion-8 |
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Alignment Details
Target: chr4 (Bit Score: 342; Significance: 0; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 7 - 380
Target Start/End: Complemental strand, 47292678 - 47292305
Alignment:
| Q |
7 |
actacccttttatattcaccaagtgctacaacttctggaattacagaattgagaccacctttaaacaaggaaacaggatcagcttcaggagacgtataaa |
106 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
47292678 |
actacccttttatattcaccaagtgctacaacttctggaattacagaattgagaccacctttaaataaggaaacaggatcagcttcaggagacgtataaa |
47292579 |
T |
|
| Q |
107 |
cttcttcacatgcacaagcaatgtaatattcttttcttcctattgcaggaacataagcaacaataagttttcctgattttctgaaattcatgatttccct |
206 |
Q |
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|
|||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
47292578 |
cttcttcacatgcacaagcaatgtaatattcttttcctcctattgcagggacataagcaacaataagttttcctgattttctgaaattcatgatttcctt |
47292479 |
T |
|
| Q |
207 |
tcgaatttcatgagtttagcccaaccgcagtttaaacgataaatatgaagacacactgcagaaatacgatgatcatatgcggctttcaacaaattatcgc |
306 |
Q |
| |
|
|||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47292478 |
tcgaatttcatgagtttagcccaaccacaatttaaacgataaatatgaagacacactgcagaaatacgatgatcatatgcggctttcaacaaattatcgc |
47292379 |
T |
|
| Q |
307 |
aaattcggggcagagatgatacctcaccatggtgctcaggtatctggccgctcaaatcaatttgcaagacgctg |
380 |
Q |
| |
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||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
47292378 |
aaattcgaggcagagatgatacctcaccatggtgctcagatatctggccgctcaaatcaatttgcaagacgctg |
47292305 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 102 - 323
Target Start/End: Original strand, 56209616 - 56209838
Alignment:
| Q |
102 |
ataaacttcttcacatgcacaagcaatgtaatattcttttcttcctattgcaggaacataagcaacaataagttttcctgattttctgaaattcatgatt |
201 |
Q |
| |
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||||| |||||||||| |||||||||||||||||||||| ||| |||| || ||||||||| |||| |||||| || |||||||||||||| | |||| |
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| T |
56209616 |
ataaatttcttcacatacacaagcaatgtaatattctttaactccaattgaagtaacataagccacaacaagtttaccagattttctgaaatttaagatt |
56209715 |
T |
|
| Q |
202 |
tcccttcgaatttcat-gagtttagcccaaccgcagtttaaacgataaatatgaagacacactgcagaaatacgatgatcatatgcggctttcaacaaat |
300 |
Q |
| |
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| |||||||||||||| ||||||||||||||| || |||||| || |||| ||||| | || |||||||||||||||||||| || |||||||||| || |
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| T |
56209716 |
tgccttcgaatttcatcgagtttagcccaaccacaatttaaagtatcaatacgaagatatacggcagaaatacgatgatcataagctgctttcaacatat |
56209815 |
T |
|
| Q |
301 |
tatcgcaaattcggggcagagat |
323 |
Q |
| |
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||||||||| | | ||||||||| |
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| T |
56209816 |
tatcgcaaaattgaggcagagat |
56209838 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 178 - 320
Target Start/End: Original strand, 45863436 - 45863579
Alignment:
| Q |
178 |
cctgattttctgaaattcatgatttcccttcgaatttcatgag-tttagcccaaccgcagtttaaacgataaatatgaagacacactgcagaaatacgat |
276 |
Q |
| |
|
||||||||||||||||||| ||||| ||||||||||||| || |||||||||||| || |||||| || ||| |||||| | || |||||||||||| |
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|
| T |
45863436 |
cctgattttctgaaattcaagatttgtcttcgaatttcatcagctttagcccaaccacaatttaaattatcaatttgaagatatacggcagaaatacgag |
45863535 |
T |
|
| Q |
277 |
gatcatatgcggctttcaacaaattatcgcaaattcggggcaga |
320 |
Q |
| |
|
||||||| || ||||||||||||||||| |||||| |||||||| |
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|
| T |
45863536 |
gatcataagctgctttcaacaaattatctcaaatttggggcaga |
45863579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 388 - 451
Target Start/End: Complemental strand, 47291991 - 47291928
Alignment:
| Q |
388 |
gtgcagtatcagtcgattagggcttggaaaggaaaagaatagtgtatgagcgttagcttagggt |
451 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
47291991 |
gtgcagtatcagtcgattagggcttggaaaggaaaagaatagtgtatgagcgttagcttagggt |
47291928 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 178 - 323
Target Start/End: Original strand, 45883384 - 45883530
Alignment:
| Q |
178 |
cctgattttctgaaattcatgatttcccttcgaatttcat-gagtttagcccaaccgcagtttaaacgataaatatgaagacacactgcagaaatacgat |
276 |
Q |
| |
|
||||||||||||||||| | ||| | ||||||||||||| |||||||||||||||||| |||||| | ||| |||||| |||| ||||||||||| |
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|
| T |
45883384 |
cctgattttctgaaatttaagatctgtcttcgaatttcatcgagtttagcccaaccgcaatttaaattgtcaatttgaagatacacaccagaaatacgag |
45883483 |
T |
|
| Q |
277 |
gatcatatgcggctttcaacaaattatcgcaaattcggggcagagat |
323 |
Q |
| |
|
||||||| || |||||||||||||||||||||||| |||| |||||| |
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|
| T |
45883484 |
gatcataagctgctttcaacaaattatcgcaaatttggggaagagat |
45883530 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 108 - 217
Target Start/End: Complemental strand, 54303492 - 54303383
Alignment:
| Q |
108 |
ttcttcacatgcacaagcaatgtaatattcttttcttcctattgcaggaacataagcaacaataagttttcctgattttctgaaattcatgatttccctt |
207 |
Q |
| |
|
||||| |||||||| ||| | |||||| |||||| ||| ||| |||| |||||||||| |||||||||||||||||||||||||| | ||||| |||| |
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|
| T |
54303492 |
ttctttacatgcactagcgacgtaatactcttttactccaatttcagggacataagcaaagataagttttcctgattttctgaaatttaagatttgcctt |
54303393 |
T |
|
| Q |
208 |
cgaatttcat |
217 |
Q |
| |
|
|||||||||| |
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|
| T |
54303392 |
cgaatttcat |
54303383 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 396 - 450
Target Start/End: Complemental strand, 47288472 - 47288417
Alignment:
| Q |
396 |
tcagtcgattagggctt-ggaaaggaaaagaatagtgtatgagcgttagcttaggg |
450 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||| |||||||| ||||||||| |
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|
| T |
47288472 |
tcagtcgattagggctttggaaaggaaaagaatagtgcatgagcgtgagcttaggg |
47288417 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 108 - 141
Target Start/End: Original strand, 45863240 - 45863273
Alignment:
| Q |
108 |
ttcttcacatgcacaagcaatgtaatattctttt |
141 |
Q |
| |
|
||||||||||||||||||||||||||||| |||| |
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|
| T |
45863240 |
ttcttcacatgcacaagcaatgtaatattatttt |
45863273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 108 - 141
Target Start/End: Original strand, 45882639 - 45882672
Alignment:
| Q |
108 |
ttcttcacatgcacaagcaatgtaatattctttt |
141 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||| |
|
|
| T |
45882639 |
ttcttcacatgcgcaagcaatgtaatattctttt |
45882672 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 110; Significance: 3e-55; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 103 - 311
Target Start/End: Original strand, 7973526 - 7973735
Alignment:
| Q |
103 |
taaacttcttcacatgcacaagcaatgtaatattcttttcttcctattgcaggaacataagcaacaataagttttcctgattttctgaaattcatgattt |
202 |
Q |
| |
|
||||||||||||||||||||| | |||||||||||||||| || ||| ||| |||||||||||||||||||| ||||||||||||||||| ||||||| |
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|
| T |
7973526 |
taaacttcttcacatgcacaacctatgtaatattcttttccacccattacagcgacataagcaacaataagtttacctgattttctgaaatttatgattt |
7973625 |
T |
|
| Q |
203 |
cccttcgaatttcat-gagtttagcccaaccgcagtttaaacgataaatatgaagacacactgcagaaatacgatgatcatatgcggctttcaacaaatt |
301 |
Q |
| |
|
||||| ||||||||| ||||||||| |||| ||| |||||| |||||||| || | |||| |||||||||||| ||||||| ||||||||||||||||| |
|
|
| T |
7973626 |
ccctttgaatttcatcgagtttagctcaactgcattttaaaggataaataacaacatacacagcagaaatacgaggatcataagcggctttcaacaaatt |
7973725 |
T |
|
| Q |
302 |
atcgcaaatt |
311 |
Q |
| |
|
||||||||| |
|
|
| T |
7973726 |
ctcgcaaatt |
7973735 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 267 - 330
Target Start/End: Original strand, 35803584 - 35803647
Alignment:
| Q |
267 |
gaaatacgatgatcatatgcggctttcaacaaattatcgcaaattcggggcagagatgatacct |
330 |
Q |
| |
|
||||||||| ||||||| ||||||||||| |||| |||||||||| ||||||||| |||||| |
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|
| T |
35803584 |
gaaatacgaggatcataagcggctttcaagaaataatcgcaaatttcaggcagagataatacct |
35803647 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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