View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3036-Insertion-9 (Length: 346)
Name: NF3036-Insertion-9
Description: NF3036
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3036-Insertion-9 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 339; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 8 - 346
Target Start/End: Complemental strand, 42224215 - 42223877
Alignment:
| Q |
8 |
ccatacagcctgaggaaattgatgccacaacatttgaaatatggaatgaactttgcatttggtggtactggtgtgtttgatacgttgaatccaggcccaa |
107 |
Q |
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| T |
42224215 |
ccatacagcctgaggaaattgatgccacaacatttgaaatatggaatgaactttgcatttggtggtactggtgtgtttgatacgttgaatccaggcccaa |
42224116 |
T |
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| Q |
108 |
acatgacaacccagatcaattttttccaacaagtcataaaagacaaagtgtacacagcctcagacatcaataattcagttgctcttgtctctgtcgctgg |
207 |
Q |
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| T |
42224115 |
acatgacaacccagatcaattttttccaacaagtcataaaagacaaagtgtacacagcctcagacatcaataattcagttgctcttgtctctgtcgctgg |
42224016 |
T |
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| Q |
208 |
aaatgattacactcgttacacggtcacaaatggctctgttgaggtaattaactttcttgttacagatttttctatatgaattgttttgaaataaaaatgg |
307 |
Q |
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| T |
42224015 |
aaatgattacactcgttacacggtcacaaatggctctgttgaggtaattaactttcttgttacagatttttctatatgaattgttttgaaataaaaatgg |
42223916 |
T |
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| Q |
308 |
atcttaacaatacatattattggtatatttatgcttatt |
346 |
Q |
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| T |
42223915 |
atcttaacaatacatattattggtatatttatgcttatt |
42223877 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 39 - 90
Target Start/End: Original strand, 26335935 - 26335986
Alignment:
| Q |
39 |
atttgaaatatggaatgaactttgcatttggtggtactggtgtgtttgatac |
90 |
Q |
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| T |
26335935 |
atttgaagtatgggatgaactttgcatatggtggtacaggtgtatttgatac |
26335986 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 39 - 120
Target Start/End: Original strand, 26322918 - 26322999
Alignment:
| Q |
39 |
atttgaaatatggaatgaactttgcatttggtggtactggtgtgtttgatacgttgaatccaggcccaaacatgacaaccca |
120 |
Q |
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| T |
26322918 |
atttgaagtatgggatgaactttgcatatggtggcacaggtgtatttgatacatttacttcaggaccaaatatgacagccca |
26322999 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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