View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3036R-Insertion-2 (Length: 776)
Name: NF3036R-Insertion-2
Description: NF3036R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3036R-Insertion-2 |
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Alignment Details
Target: chr3 (Bit Score: 514; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 514; E-Value: 0
Query Start/End: Original strand, 9 - 588
Target Start/End: Original strand, 32272376 - 32272952
Alignment:
| Q |
9 |
gttattgtaagaagggagtggtggcatgattggttttgttttgattgaattgtggtattggagaatggctgtggttgtggtgttatcgaacggtgcattt |
108 |
Q |
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| T |
32272376 |
gttattgtaagaagggagtggtggcatgattggttttgttttgattgaattgtggtattggagaatggctgtggttgtggtgttatcgaacggtgcattt |
32272475 |
T |
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| Q |
109 |
tgggcggattgataggcgcgtgcagctatgtagtatttggaaggtggttggtttgcgtgtattaagacatcggtggtttggccgggtcctaacatgagga |
208 |
Q |
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| T |
32272476 |
tgggcggattgataggcgcgtgcagctatgtagtatttggaaggtggttggtttgcgtgtattaagacatcggtggtttggccgggtcctaacatgagga |
32272575 |
T |
|
| Q |
209 |
tgttggtggtgaagggtttaacgtaagaggcatctgcgccaaccacggttagtttgtggttggcaattgtgaagaaaagtggttggttgagtgctgcatt |
308 |
Q |
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| T |
32272576 |
tgttggtggtgaagggtttaacgtaagaggcatctgcgccaaccacggttagtttgtggttggcaattgtgaagaaaagtggttggttgagtgccgcatt |
32272675 |
T |
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| Q |
309 |
gatcactctgacgaggtttgtttctccggaatgtattggaataattgttgtgcctgcagtttcaatcattcatgtcaaaataagaaaattagtcatgtat |
408 |
Q |
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| T |
32272676 |
gatcactctgacgaggtttgtttctccggaatgtattggaataattgttgtgcctgcagtttcaatcattcatgtcaaaataagaaaattagtcatgtat |
32272775 |
T |
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| Q |
409 |
tgttgagaatgtgtgacatagttattgatcttagttgtccgattgaaaatcaaccgtaaagattagtaaatcaatggatctcaaattaaagattgaaatc |
508 |
Q |
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| T |
32272776 |
tgttgagaatgtgtgacatagttattgatcttagttgtccgattgaaaatcaaccgtgaagattggtaaatcaatcgatctcaaattaaagattgaaatc |
32272875 |
T |
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| Q |
509 |
atttgatttgtgtaactattttattcnnnnnnnnnnnnnnnaatatctatttagaaaaatgatagctttttctatgattc |
588 |
Q |
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| T |
32272876 |
atttgatttgtgtaactattttattc---ttttttttttttaatatctatttagaaaaatgatagctttttctatgattc |
32272952 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 663 - 776
Target Start/End: Original strand, 32273027 - 32273139
Alignment:
| Q |
663 |
ggtcccgtcataatagaccctgtaccnnnnnnnnggaacgccattgaccatttgtttgataaaatcattgaaatagtatcttttaataatctcatataat |
762 |
Q |
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| T |
32273027 |
ggtcccgtcataatagaccctgtaccaaaaaaa-ggaactccattgaccatttgtttgataaaatcattgaaatagtatcttttaataatctcatataat |
32273125 |
T |
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| Q |
763 |
tatgagctctaggg |
776 |
Q |
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| T |
32273126 |
tatgagctctaggg |
32273139 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 93; Significance: 7e-45; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 93; E-Value: 7e-45
Query Start/End: Original strand, 70 - 366
Target Start/End: Original strand, 35991665 - 35991961
Alignment:
| Q |
70 |
agaatggctgtggttgtggtgttatcgaacggtgcattttgggcggattgataggcgcgtgcagctatgtagtatttggaaggtggttggtttgcgtgta |
169 |
Q |
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|||||||| |||||||| ||||||||||| | || ||||| || ||||| || |||||| | || ||||||||| | || |||||||||| | || | |
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| T |
35991665 |
agaatggcagtggttgttgtgttatcgaatgcagcgttttgagctgattggtaagcgcgtccggcgatgtagtatcttgatggtggttggtcaccttgga |
35991764 |
T |
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| Q |
170 |
ttaagacatcggtggtttggccgggtcctaacatgaggatgttggtggtgaagggtttaacgtaagaggcatctgcgccaaccacggttagtttgtggtt |
269 |
Q |
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| T |
35991765 |
tgagaacatcagtggtttggccaggtcctaacatgaggacattggttgtgaatggtttgacataggaagcatcagcacctactactgttagtttatggtt |
35991864 |
T |
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| Q |
270 |
ggcaattgtgaagaaaagtggttggttgagtgctgcattgatcactctgacgaggtttgtttctccggaatgtattggaataattgttgtgcctgca |
366 |
Q |
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| T |
35991865 |
tgcaattgtgaagaaaagaggttggtttaaggctgcattgattactcttatgaggtttgtttctcctgaatctattggaacaattgttgtgcctgca |
35991961 |
T |
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