View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3036R-Insertion-3 (Length: 742)
Name: NF3036R-Insertion-3
Description: NF3036R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3036R-Insertion-3 |
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Alignment Details
Target: chr2 (Bit Score: 141; Significance: 2e-73; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 141; E-Value: 2e-73
Query Start/End: Original strand, 393 - 633
Target Start/End: Complemental strand, 32436459 - 32436220
Alignment:
| Q |
393 |
gagatacagtcatcacccctaacaattgtcttcgatcatcattcctcgcaaatgcgtgctcttgttgtgcagaatcgccaccacacagcaaatctacatg |
492 |
Q |
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| T |
32436459 |
gagatacaatcatcaccc-taacaacagtcttcaaccttcattccttgcaaatgtgtgctcctgttgtgcagaatcgccaccacacagcaaacctacatg |
32436361 |
T |
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| Q |
493 |
ccttttgcttcatgcaaactggctcaccattctagtctcctctgctgcaagcaactacttccccaacacaagtgggcctctgcatactctagccattgca |
592 |
Q |
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| T |
32436360 |
ccttttgcttcatgcaaaccagctcaccattctagtctcctttgctgcaagcaactacttccccaacacaagtgtggcgctacacagtcttgccattgca |
32436261 |
T |
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| Q |
593 |
acaacaacttccctaccacacattttccgggagattatgtg |
633 |
Q |
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| T |
32436260 |
acaacgacgtccctaccacacatttgccgggagattatgtg |
32436220 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 180 - 285
Target Start/End: Complemental strand, 32436713 - 32436608
Alignment:
| Q |
180 |
aaagtaaggcctcaagtttggtaagggttt-gagtaaacaaattagaggggcatcacatgcataatacattaggtattaaaataaagatgagaccttaaa |
278 |
Q |
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| T |
32436713 |
aaagtaaggcatcaggtttggtgaggtttttgagtgaacaaattagaggg-catcacatgcgtaatatattaggtcttaaaataaaggtgagaccttaaa |
32436615 |
T |
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| Q |
279 |
attagtg |
285 |
Q |
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| T |
32436614 |
gttagtg |
32436608 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 667 - 728
Target Start/End: Complemental strand, 32436221 - 32436160
Alignment:
| Q |
667 |
tgctccctccagcaaatgccatctctaacggacccttcatcagcagccgatcattagcaaga |
728 |
Q |
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| T |
32436221 |
tgctccctccagcgaatgccatctctaacggacccttcatcagcggccgatcataagcaaga |
32436160 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 103 - 160
Target Start/End: Complemental strand, 32436771 - 32436714
Alignment:
| Q |
103 |
aatgtattttaaattcaaagattgagttatgtgactagtgtattagtgttaaattgct |
160 |
Q |
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| T |
32436771 |
aatgtattttaaattcaaagattgagttatgtaagtagtgcattggtgttaaattgct |
32436714 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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