View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3036R-Insertion-4 (Length: 728)
Name: NF3036R-Insertion-4
Description: NF3036R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3036R-Insertion-4 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 608; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 608; E-Value: 0
Query Start/End: Original strand, 8 - 656
Target Start/End: Original strand, 51224444 - 51225092
Alignment:
| Q |
8 |
aatccattaacaatagttccccatatctcaagcaagtctgcaataccataatgcttttctgtctcaaaaacatagttcaacaaaacatctgtcatcgatt |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51224444 |
aatccattaacaatagttccccatatctcaagcaagtctgcaataccataatgcttttctgtctcaaaaacatagttcaacaaaacatctgtcatcgatt |
51224543 |
T |
|
| Q |
108 |
tcctcatcgcagaacggtcgcaaacgaacttagaatatatcttgtggtatacatttttcaaactttcgcgttcccttggatcttcggattggaaaagcga |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
51224544 |
tcctcatcgcagaacggtcgcaaacgaacttagaatatatcttgtggtatacatttttcaaactttcgcgttccctcggatcttcggattggaaaagcgt |
51224643 |
T |
|
| Q |
208 |
taacagattaaggaggaaagaatgatccatataatttctaagtattttggtgtctatgctattaacaaacctaagaaggatttcataaactatttgtaga |
307 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
51224644 |
taacagattaaggaggaaagaatgatccatataatttctaagtattttggtgtctgtgctattaacaagcctaagaaggatttcataaactatttgtaga |
51224743 |
T |
|
| Q |
308 |
tgtgaccataaaggtgaaaatatggaaataggatcttcttcatcaagaaattctgatatagctgaaggatttgtaggtggaggaagtggcctgaaaagat |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51224744 |
tgtgaccataaaggtgaaaatatggaaataggatcttcttcatcaagaaattctgatatagctgaaggatttgtaggtggaggaagtggcctgaaaagat |
51224843 |
T |
|
| Q |
408 |
tggctttgatcattgatactaaaggtcttaaaactttctcatggactggnnnnnnngaggatttcatcatagcaatgagccttgaaagttgaagtctttt |
507 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51224844 |
tggctttgatcattgatactaaaggtcttaaaactttctcatggactggtttttttgaggatttcatcatagcaatgagccttgaaagttgaagtctttt |
51224943 |
T |
|
| Q |
508 |
agagtctctttgtgcaggggattctgaagggtcagtgaaggtgaaaacaaaggtgcagtaagaaacagtagagagaatttcttcatttcctgaagtagga |
607 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51224944 |
agagtctctttgtgcaggggattctgaagggtcagtgaaggtgaaaacaaaggtgcagtaagaaacagtagagagaatttcttcatttcctgaagtagga |
51225043 |
T |
|
| Q |
608 |
gaagatggtattgaaaaaagaggcttttcttgcacaaaaaattcttgaa |
656 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
51225044 |
gaagatggtattgaaaaaagaggcttttcttgcacaaaaaattcatgaa |
51225092 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University