View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3036R-Insertion-5 (Length: 445)

Name: NF3036R-Insertion-5
Description: NF3036R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3036R-Insertion-5
NF3036R-Insertion-5
[»] chr1 (7 HSPs)
chr1 (9-320)||(28241459-28241770)
chr1 (312-344)||(43954365-43954397)
chr1 (312-345)||(40920610-40920643)
chr1 (312-344)||(6025774-6025806)
chr1 (316-344)||(6299478-6299506)
chr1 (312-344)||(8342962-8342994)
chr1 (312-344)||(30834058-30834090)
[»] scaffold0373 (1 HSPs)
scaffold0373 (312-344)||(2382-2414)
[»] chr4 (4 HSPs)
chr4 (312-344)||(6843784-6843816)
chr4 (312-344)||(7544604-7544636)
chr4 (312-344)||(41192230-41192262)
chr4 (312-344)||(50662557-50662589)
[»] chr2 (3 HSPs)
chr2 (312-344)||(12026086-12026118)
chr2 (312-344)||(32402669-32402701)
chr2 (312-344)||(42582519-42582551)
[»] chr8 (4 HSPs)
chr8 (312-363)||(37826437-37826488)
chr8 (312-344)||(10079988-10080020)
chr8 (312-344)||(38483050-38483082)
chr8 (312-344)||(39388952-39388984)
[»] chr3 (2 HSPs)
chr3 (312-363)||(11284138-11284189)
chr3 (312-341)||(46140579-46140608)
[»] chr7 (3 HSPs)
chr7 (312-344)||(29653627-29653659)
chr7 (312-344)||(30200045-30200077)
chr7 (312-344)||(40139029-40139061)
[»] chr6 (1 HSPs)
chr6 (312-344)||(35199703-35199735)


Alignment Details
Target: chr1 (Bit Score: 273; Significance: 1e-152; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 9 - 320
Target Start/End: Original strand, 28241459 - 28241770
Alignment:
Q  9 tattggacctttgtgcattaatgcatgttgttgtattcctaaactgttaaacacaggtaaggctatatggagggtattttcaaagtcttgataaagttct 108  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28241459 tattggaactttgtgcattaatgcatgttgttgtattcctaaactgttaaacacaggtaaggctatatggagggtattttcaaagtcttgataaagttct 28241558  T
Q  109 gatgcaatatgtatgatcggtatgctagaagttaaagataagagcagatacatttgtaagaattgggaagaatacatgacattatagaccaaaatttgaa 208  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||| ||||||||||||||| |||    
T  28241559 gatgcaatatgtatgatcggtatgctagaagttaaagataagagcatatacatttgtaagaattgggaagaatacgtgacgttatagaccaaaattagaa 28241658  T
Q  209 catgaaaaatcaatgttacataccaatgactaagtgtgggatactaagtggtgtcggct-aatagatcaaacgacatcataatattttatcatgaacaat 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| ||||||||||||||||||    
T  28241659 catgaaaaatcaatgttacataccaatgactaagtgtgggatactaagtggtgtcggctaaatagatcaaacgacat-atattattttatcatgaacaat 28241757  T
Q  308 attgtatttctat 320  Q
    |||||||||||||    
T  28241758 attgtatttctat 28241770  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 312 - 344
Target Start/End: Complemental strand, 43954397 - 43954365
Alignment:
Q  312 tatttctatcaaactcattaatctctagatctt 344  Q
    |||||||||||||||||||||||||||||||||    
T  43954397 tatttctatcaaactcattaatctctagatctt 43954365  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 312 - 345
Target Start/End: Original strand, 40920610 - 40920643
Alignment:
Q  312 tatttctatcaaactcattaatctctagatctta 345  Q
    |||||||||| |||||||||||||||||||||||    
T  40920610 tatttctatccaactcattaatctctagatctta 40920643  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 312 - 344
Target Start/End: Complemental strand, 6025806 - 6025774
Alignment:
Q  312 tatttctatcaaactcattaatctctagatctt 344  Q
    |||||||||| ||||||||||||||||||||||    
T  6025806 tatttctatccaactcattaatctctagatctt 6025774  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 316 - 344
Target Start/End: Original strand, 6299478 - 6299506
Alignment:
Q  316 tctatcaaactcattaatctctagatctt 344  Q
    |||||||||||||||||||||||||||||    
T  6299478 tctatcaaactcattaatctctagatctt 6299506  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 312 - 344
Target Start/End: Original strand, 8342962 - 8342994
Alignment:
Q  312 tatttctatcaaactcattaatctctagatctt 344  Q
    |||||||||| ||||||||||||||||||||||    
T  8342962 tatttctatccaactcattaatctctagatctt 8342994  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 312 - 344
Target Start/End: Original strand, 30834058 - 30834090
Alignment:
Q  312 tatttctatcaaactcattaatctctagatctt 344  Q
    |||||||||| ||||||||||||||||||||||    
T  30834058 tatttctatccaactcattaatctctagatctt 30834090  T

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Target: scaffold0373 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0373
Description:

Target: scaffold0373; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 312 - 344
Target Start/End: Original strand, 2382 - 2414
Alignment:
Q  312 tatttctatcaaactcattaatctctagatctt 344  Q
    |||||||||||||||||||||||||||||||||    
T  2382 tatttctatcaaactcattaatctctagatctt 2414  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 312 - 344
Target Start/End: Complemental strand, 6843816 - 6843784
Alignment:
Q  312 tatttctatcaaactcattaatctctagatctt 344  Q
    |||||||||||||||||||||||||||||||||    
T  6843816 tatttctatcaaactcattaatctctagatctt 6843784  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 312 - 344
Target Start/End: Original strand, 7544604 - 7544636
Alignment:
Q  312 tatttctatcaaactcattaatctctagatctt 344  Q
    |||||| ||||||||||||||||||||||||||    
T  7544604 tatttcgatcaaactcattaatctctagatctt 7544636  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 312 - 344
Target Start/End: Complemental strand, 41192262 - 41192230
Alignment:
Q  312 tatttctatcaaactcattaatctctagatctt 344  Q
    |||||||||| ||||||||||||||||||||||    
T  41192262 tatttctatccaactcattaatctctagatctt 41192230  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 312 - 344
Target Start/End: Complemental strand, 50662589 - 50662557
Alignment:
Q  312 tatttctatcaaactcattaatctctagatctt 344  Q
    |||||| ||||||||||||||||||||||||||    
T  50662589 tatttcgatcaaactcattaatctctagatctt 50662557  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 312 - 344
Target Start/End: Original strand, 12026086 - 12026118
Alignment:
Q  312 tatttctatcaaactcattaatctctagatctt 344  Q
    |||||||||||||||||||||||||||||||||    
T  12026086 tatttctatcaaactcattaatctctagatctt 12026118  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 312 - 344
Target Start/End: Complemental strand, 32402701 - 32402669
Alignment:
Q  312 tatttctatcaaactcattaatctctagatctt 344  Q
    |||||||||| ||||||||||||||||||||||    
T  32402701 tatttctatccaactcattaatctctagatctt 32402669  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 312 - 344
Target Start/End: Original strand, 42582519 - 42582551
Alignment:
Q  312 tatttctatcaaactcattaatctctagatctt 344  Q
    ||||||||||||||||||||||||||| |||||    
T  42582519 tatttctatcaaactcattaatctctacatctt 42582551  T

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Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 312 - 363
Target Start/End: Complemental strand, 37826488 - 37826437
Alignment:
Q  312 tatttctatcaaactcattaatctctagatcttaataatttatcttatagtt 363  Q
    |||||||||| |||||  ||||||||||||||||||| ||| ||||||||||    
T  37826488 tatttctatccaactcgctaatctctagatcttaatagtttctcttatagtt 37826437  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 312 - 344
Target Start/End: Original strand, 10079988 - 10080020
Alignment:
Q  312 tatttctatcaaactcattaatctctagatctt 344  Q
    |||||||||| ||||||||||||||||||||||    
T  10079988 tatttctatccaactcattaatctctagatctt 10080020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 312 - 344
Target Start/End: Original strand, 38483050 - 38483082
Alignment:
Q  312 tatttctatcaaactcattaatctctagatctt 344  Q
    |||||||||| ||||||||||||||||||||||    
T  38483050 tatttctatccaactcattaatctctagatctt 38483082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 312 - 344
Target Start/End: Complemental strand, 39388984 - 39388952
Alignment:
Q  312 tatttctatcaaactcattaatctctagatctt 344  Q
    |||||||||| ||||||||||||||||||||||    
T  39388984 tatttctatccaactcattaatctctagatctt 39388952  T

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Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 312 - 363
Target Start/End: Complemental strand, 11284189 - 11284138
Alignment:
Q  312 tatttctatcaaactcattaatctctagatcttaataatttatcttatagtt 363  Q
    ||||| |||| |||||||||||||||| ||||||||| ||| ||||||||||    
T  11284189 tatttatatccaactcattaatctctacatcttaatagtttctcttatagtt 11284138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 312 - 341
Target Start/End: Complemental strand, 46140608 - 46140579
Alignment:
Q  312 tatttctatcaaactcattaatctctagat 341  Q
    ||||||||||||||||||||||||||||||    
T  46140608 tatttctatcaaactcattaatctctagat 46140579  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 312 - 344
Target Start/End: Original strand, 29653627 - 29653659
Alignment:
Q  312 tatttctatcaaactcattaatctctagatctt 344  Q
    |||||||||| ||||||||||||||||||||||    
T  29653627 tatttctatctaactcattaatctctagatctt 29653659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 312 - 344
Target Start/End: Original strand, 30200045 - 30200077
Alignment:
Q  312 tatttctatcaaactcattaatctctagatctt 344  Q
    ||||| |||||||||||||||||||||||||||    
T  30200045 tatttatatcaaactcattaatctctagatctt 30200077  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 312 - 344
Target Start/End: Original strand, 40139029 - 40139061
Alignment:
Q  312 tatttctatcaaactcattaatctctagatctt 344  Q
    |||||||||||||| ||||||||||||||||||    
T  40139029 tatttctatcaaacgcattaatctctagatctt 40139061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 312 - 344
Target Start/End: Original strand, 35199703 - 35199735
Alignment:
Q  312 tatttctatcaaactcattaatctctagatctt 344  Q
    |||||||||| ||||||||||||||||||||||    
T  35199703 tatttctatctaactcattaatctctagatctt 35199735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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