View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3036R-Insertion-6 (Length: 362)
Name: NF3036R-Insertion-6
Description: NF3036R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3036R-Insertion-6 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 248; Significance: 1e-137; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 12 - 362
Target Start/End: Complemental strand, 8472537 - 8472190
Alignment:
| Q |
12 |
attccacacgcaaagttgtcaacgcctcactaagcttatgcactttccacacaataaagnnnnnnn-tatacaccttcaaatttaactttactatagtac |
110 |
Q |
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| T |
8472537 |
attccacacgcaaagttgtcaacgcctcactaagcttatgcactttccacacaataaagaaaaaaaatatacatcttcaaatttaactttactatagtac |
8472438 |
T |
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| Q |
111 |
taactgtccaatccaacaaattaaattccacatgtccattcatcaagagagtatgtgt--gtgtatcttgttattttctctcatatcatatcatttgttg |
208 |
Q |
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| T |
8472437 |
taactgtccaatccaacaaatttaattccacatgtccattcatcaagagagtatgtgtgtgtgtatcttgttattttctc-----tcatatcatttgttg |
8472343 |
T |
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| Q |
209 |
gttatagttaacagctatacactatgtgaatagacaggctggctgatannnnnnnagttgtatggtgttaatcgactaggcttattgtttaggttttagt |
308 |
Q |
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| T |
8472342 |
gctatagttaacagctatacactatgtgaatagacaggctggttgata-ttttttagttgtatggtgttgatcgactaggcttattgtttaggttttagt |
8472244 |
T |
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| Q |
309 |
tggctttggccttttcttcttctttaaccttattccaactgtccaacatccttt |
362 |
Q |
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| T |
8472243 |
tggctttggccttttcttcttctttaaccttattccaactgtccaacatccttt |
8472190 |
T |
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