View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3036R-Insertion-8 (Length: 340)

Name: NF3036R-Insertion-8
Description: NF3036R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3036R-Insertion-8
NF3036R-Insertion-8
[»] chr7 (8 HSPs)
chr7 (9-309)||(2335801-2336095)
chr7 (128-309)||(2319550-2319732)
chr7 (163-302)||(1087053-1087195)
chr7 (158-302)||(1594547-1594694)
chr7 (139-229)||(3957057-3957147)
chr7 (9-77)||(2319405-2319473)
chr7 (157-229)||(2327802-2327874)
chr7 (29-77)||(2326257-2326305)
[»] scaffold0491 (2 HSPs)
scaffold0491 (163-309)||(7777-7923)
scaffold0491 (158-230)||(3232-3304)
[»] chr8 (4 HSPs)
chr8 (158-309)||(18751401-18751555)
chr8 (158-230)||(18741426-18741498)
chr8 (158-230)||(18746390-18746462)
chr8 (158-230)||(18755597-18755669)


Alignment Details
Target: chr7 (Bit Score: 258; Significance: 1e-143; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 9 - 309
Target Start/End: Original strand, 2335801 - 2336095
Alignment:
Q  9 tttatatctaatttcgtcaaacatgtgtagcacaatcaatgagtctaatcattaaatcgtactgaatatgaatattggtctgtgagaatgacaccattat 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      ||||||||||||||||||||||||||||    
T  2335801 tttatatctaatttcgtcaaacatgtgtagcacaatcaatgagtctaatcattaaatcgtactgaa------tattggtctgtgagaatgacaccattat 2335894  T
Q  109 aaatgttctatatacatattagaacaatgtatgcaattcattagatctcaaaaaatgaacttgacaaaatatttagtttccaattcctatggtccaaaaa 208  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  2335895 aaatgttctatatacatattagaacaatgtatgaaattcattagatctcaaaaaatgaacttaacaaaatatttagtttccaattcctatggtccaaaaa 2335994  T
Q  209 tgaggatggtctttcttcttatctggattttcattgtaggtacttaatctgccacaatgaaatctcaacttcaaatgaacgcaaatgctataatgaatag 308  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| | ||||||||||||||||||||    
T  2335995 tgaggatggtctttcttcttatctggattttcattgtaggtactcaatctgccacaatgaaatctcaacttcaaatggaagcaaatgctataatgaatag 2336094  T

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Target: chr7; HSP #2
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 128 - 309
Target Start/End: Original strand, 2319550 - 2319732
Alignment:
Q  128 tagaacaatgtatgcaattcattagatctcaaaa-aatgaacttgacaaaatatttagtttccaattcctatggtccaaaaatgaggatggtctttcttc 226  Q
    ||||| |||||| |||||||||||||||| |||| ||||||||||| |||||| ||||||||||||| ||||||||  |||||| |||||||||||||||    
T  2319550 tagaataatgtaagcaattcattagatctaaaaaaaatgaacttgataaaatacttagtttccaatttctatggtcagaaaatgtggatggtctttcttc 2319649  T
Q  227 ttatctggattttcattgtaggtacttaatctgccacaatgaaatctcaacttcaaatgaacgcaaatgctataatgaatagt 309  Q
    |||| |||  ||||||||| |||||| |||||||| || ||| |||||||| ||| ||| | |||||||| ||| | ||||||    
T  2319650 ttatttggcctttcattgtgggtactcaatctgcctcagtgacatctcaacctcatatggaagcaaatgcgatattaaatagt 2319732  T

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Target: chr7; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 163 - 302
Target Start/End: Original strand, 1087053 - 1087195
Alignment:
Q  163 atgaacttgacaaaatatttagtttccaattcctatggtccaaaaatgaggatggtctttcttcttatctggattttcattgtaggtacttaat---ctg 259  Q
    |||||||  ||||||||||||||||| |||| || || |||||||||| |||| | ||||||| |||| || | ||| ||||| || ||| |||   |||    
T  1087053 atgaactacacaaaatatttagtttcaaatttctttgatccaaaaatgtggattgcctttcttattatttgcagtttgattgtgggaactcaatctgctg 1087152  T
Q  260 ccacaatgaaatctcaacttcaaatgaacgcaaatgctataat 302  Q
    |||| |||| |||||||||||||||| | ||||||||||||||    
T  1087153 ccactatgacatctcaacttcaaatggaagcaaatgctataat 1087195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 158 - 302
Target Start/End: Original strand, 1594547 - 1594694
Alignment:
Q  158 aaaaaatgaacttgacaaaatatttagtttccaattcctatggtccaaaaatgaggatggtctttcttcttatctggattttcattgtaggtacttaatc 257  Q
    |||| |||||||||| |||||||||| |||| ||||||| |||||||||||||| ||| | |||||||||||| || | | | | ||| || ||| ||||    
T  1594547 aaaatatgaacttgagaaaatatttaatttcaaattcctttggtccaaaaatgatgattgcctttcttcttatttgcagtctgactgtgggaactcaatc 1594646  T
Q  258 tgccacaatgaaatctc---aacttcaaatgaacgcaaatgctataat 302  Q
    ||||| || || |||||   ||||||||||| | |||||||| |||||    
T  1594647 tgccaaaacgacatctcataaacttcaaatggaagcaaatgcaataat 1594694  T

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Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 139 - 229
Target Start/End: Complemental strand, 3957147 - 3957057
Alignment:
Q  139 atgcaattcattagatctcaaaaaatgaacttgacaaaatatttagtttccaattcctatggtccaaaaatgaggatggtctttcttctta 229  Q
    ||||||||||||  ||||||||||||||||||||||||||||||   ||| |||  |||| ||||||||||| ||| | | ||||||||||    
T  3957147 atgcaattcattcaatctcaaaaaatgaacttgacaaaatatttttgttctaatatctatagtccaaaaatgtggaagatttttcttctta 3957057  T

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Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 9 - 77
Target Start/End: Original strand, 2319405 - 2319473
Alignment:
Q  9 tttatatctaatttcgtcaaacatgtgtagcacaatcaatgagtctaatcattaaatcgtactgaatat 77  Q
    |||||||||||| || | | |||||||||| || ||||||||||||||||||| |||||||| ||||||    
T  2319405 tttatatctaatgtcatgatacatgtgtagtactatcaatgagtctaatcattcaatcgtaccgaatat 2319473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 157 - 229
Target Start/End: Original strand, 2327802 - 2327874
Alignment:
Q  157 caaaaaatgaacttgacaaaatatttagtttccaattcctatggtccaaaaatgaggatggtctttcttctta 229  Q
    ||||||||||||||||||||||||||| || | |||| | ||  |||||||||| || |||||||||||||||    
T  2327802 caaaaaatgaacttgacaaaatatttatttcctaatttcaatattccaaaaatgtgggtggtctttcttctta 2327874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 29 - 77
Target Start/End: Original strand, 2326257 - 2326305
Alignment:
Q  29 acatgtgtagcacaatcaatgagtctaatcattaaatcgtactgaatat 77  Q
    ||||||||||||| |||||| ||||||||||||| ||||||| ||||||    
T  2326257 acatgtgtagcaccatcaattagtctaatcattatatcgtacagaatat 2326305  T

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Target: scaffold0491 (Bit Score: 59; Significance: 6e-25; HSPs: 2)
Name: scaffold0491
Description:

Target: scaffold0491; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 163 - 309
Target Start/End: Complemental strand, 7923 - 7777
Alignment:
Q  163 atgaacttgacaaaatatttagtttccaattcctatggtccaaaaatgaggatggtctttcttcttatctggattttcattgtaggtacttaatctgcca 262  Q
    |||| ||||| |||||||||| |||| |||| || ||||||||||||| ||||||||||||||||||| ||   |||  |||  || ||| |||||||||    
T  7923 atgagcttgaaaaaatatttaatttcaaatttctttggtccaaaaatgtggatggtctttcttcttatttgcggtttggttgagggaactcaatctgcca 7824  T
Q  263 caatgaaatctcaacttcaaatgaacgcaaatgctataatgaatagt 309  Q
    |||||| |||||||||||||||| | |||||||||||| | ||||||    
T  7823 caatgacatctcaacttcaaatggaagcaaatgctatattaaatagt 7777  T

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Target: scaffold0491; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 158 - 230
Target Start/End: Complemental strand, 3304 - 3232
Alignment:
Q  158 aaaaaatgaacttgacaaaatatttagtttccaattcctatggtccaaaaatgaggatggtctttcttcttat 230  Q
    |||| |||||||||| ||||||||||||||| |||| || ||||||||||||| |||||||||||||||||||    
T  3304 aaaatatgaacttgataaaatatttagtttcaaatttctttggtccaaaaatgtggatggtctttcttcttat 3232  T

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Target: chr8 (Bit Score: 57; Significance: 9e-24; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 158 - 309
Target Start/End: Complemental strand, 18751555 - 18751401
Alignment:
Q  158 aaaaaatgaacttgacaaaatatttagtttccaattcctatggtccaaaaatgaggatggtctttcttcttatctggattttcattgtaggtacttaatc 257  Q
    |||| |||||||||| ||||||||||||||| |||| || ||||||||||||| ||||||||||||||||||| ||   |||  |||  || ||| ||||    
T  18751555 aaaatatgaacttgataaaatatttagtttcaaatttctttggtccaaaaatgtggatggtctttcttcttatttgcggtttggttgagggaactcaatc 18751456  T
Q  258 tgccacaatgaaatc---tcaacttcaaatgaacgcaaatgctataatgaatagt 309  Q
    ||||||||||| |||   ||||||||||||| | |||||||||||| | ||||||    
T  18751455 tgccacaatgacatctcatcaacttcaaatggaagcaaatgctatattaaatagt 18751401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 158 - 230
Target Start/End: Complemental strand, 18741498 - 18741426
Alignment:
Q  158 aaaaaatgaacttgacaaaatatttagtttccaattcctatggtccaaaaatgaggatggtctttcttcttat 230  Q
    |||| |||||||||| ||||||||||||||| |||| || ||||||||||||| |||||||||||||||||||    
T  18741498 aaaatatgaacttgataaaatatttagtttcaaatttctttggtccaaaaatgtggatggtctttcttcttat 18741426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 158 - 230
Target Start/End: Complemental strand, 18746462 - 18746390
Alignment:
Q  158 aaaaaatgaacttgacaaaatatttagtttccaattcctatggtccaaaaatgaggatggtctttcttcttat 230  Q
    |||| |||||||||| ||||||||||||||| |||| || ||||||||||||| |||||||||||||||||||    
T  18746462 aaaatatgaacttgataaaatatttagtttcaaatttctttggtccaaaaatgtggatggtctttcttcttat 18746390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 158 - 230
Target Start/End: Complemental strand, 18755669 - 18755597
Alignment:
Q  158 aaaaaatgaacttgacaaaatatttagtttccaattcctatggtccaaaaatgaggatggtctttcttcttat 230  Q
    |||||| |||||||||||||||||||||||| |||| |  ||||||||| ||| |||  | ||||||||||||    
T  18755669 aaaaaaagaacttgacaaaatatttagtttcaaatttcattggtccaaatatgtggaatgcctttcttcttat 18755597  T

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