View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3036_high_3 (Length: 294)
Name: NF3036_high_3
Description: NF3036
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3036_high_3 |
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Alignment Details
Target: chr2 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 9 - 285
Target Start/End: Complemental strand, 25288069 - 25287793
Alignment:
| Q |
9 |
taggaacatagggatcaagtgtctaaacaacctaaaccaaagattagtggtgtttagtggttaaggtataattagttattgttgcagcacttttgatgga |
108 |
Q |
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| T |
25288069 |
taggtacaaagggatcaagtgtctaaacaacctaaaccaaagattagtggtgtttagtggttaaggtataattagttattgttgtagcacttttgatgga |
25287970 |
T |
|
| Q |
109 |
aaagaaatttgattccatttttgttctataggcttctgaatatgctaaaaggttggttaatcaagagaagtcttttgcttgtgccgaagtcgagagtact |
208 |
Q |
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| T |
25287969 |
aaagaaatttgattccatttttgttctataggcttctgaatatgctaaaaggttggttaatcaagagaagtcttttgcttgtgctgaagtcgagagtact |
25287870 |
T |
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| Q |
209 |
agagcagtggtgctgagaattggggaggcacttgaagaacaagaaaaagttacacaagcttctaaaccacaggttct |
285 |
Q |
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| T |
25287869 |
agagcagtggtgctgagaattggggaggcacttgaagaacaagaaaaagatacacaagcttctaaaccacaggttct |
25287793 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 136; Significance: 6e-71; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 110 - 285
Target Start/End: Complemental strand, 34814032 - 34813857
Alignment:
| Q |
110 |
aagaaatttgattccatttttgttctataggcttctgaatatgctaaaaggttggttaatcaagagaagtcttttgcttgtgccgaagtcgagagtacta |
209 |
Q |
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|||| ||||||| |||| ||||||| ||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||| |||||||| ||| |
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| T |
34814032 |
aagatatttgatcccatctttgttcaataggcttctgaagatgctaaaaagttggttaatcaagagaagtcttttgcttgtgccgaaatcgagagtgcta |
34813933 |
T |
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| Q |
210 |
gagcagtggtgctgagaattggggaggcacttgaagaacaagaaaaagttacacaagcttctaaaccacaggttct |
285 |
Q |
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| T |
34813932 |
gagcagtggtgctgagaattggggaggcacttgaggaacaagaaaaagttacagaagcttctaaaccacaggttct |
34813857 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 113; Significance: 3e-57; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 108 - 274
Target Start/End: Original strand, 29736614 - 29736777
Alignment:
| Q |
108 |
aaaagaaatttgattccatttttgttctataggcttctgaatatgctaaaaggttggttaatcaagagaagtcttttgcttgtgccgaagtcgagagtac |
207 |
Q |
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||||||||| ||||||||| ||||| ||||||||||||||| ||||||||| |||||||||||||||| |||||||||||||||||||| |||||| | | |
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| T |
29736614 |
aaaagaaatgtgattccatctttgtgctataggcttctgaagatgctaaaaagttggttaatcaagagcagtcttttgcttgtgccgaaatcgagaatgc |
29736713 |
T |
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| Q |
208 |
tagagcagtggtgctgagaattggggaggcacttgaagaacaagaaaaagttacacaagcttctaaa |
274 |
Q |
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| T |
29736714 |
tagagcagtggtgctgagatttggggaggcacttgaag---aagaaaaagttacacaagcttctaaa |
29736777 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 25 - 85
Target Start/End: Complemental strand, 44562808 - 44562748
Alignment:
| Q |
25 |
aagtgtctaaacaacctaaaccaaagattagtggtgtttagtggttaaggtataattagtt |
85 |
Q |
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|||||||||||||| | || |||||||||||||||||||||| ||||| | ||||||||| |
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| T |
44562808 |
aagtgtctaaacaatccgaaacaaagattagtggtgtttagtgattaagttctaattagtt |
44562748 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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