View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3036_low_1 (Length: 597)
Name: NF3036_low_1
Description: NF3036
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3036_low_1 |
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| [»] scaffold0018 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 422; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 422; E-Value: 0
Query Start/End: Original strand, 10 - 580
Target Start/End: Complemental strand, 34749000 - 34748429
Alignment:
| Q |
10 |
gagagaagaagataattgttgaaatgattgattgattagaaatgaagcacatggtcaagtttaaatacaaccctcaaggctaaaagagtaaaatgacata |
109 |
Q |
| |
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|||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34749000 |
gagaaaagaagataattgttgaaatgattgattgattagaaatgaggcacatggtcaagtttaaatacaaccctcaaggctaaaagagtaaaatgacata |
34748901 |
T |
|
| Q |
110 |
agataaatattatttaaataaactaattatctaacactttattccaataacaaaataaagacactttcgttgcatcgtaacactacnnnnnnnnngacat |
209 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||| |||||||||||||| ||||| |
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| T |
34748900 |
aggtaaatattatttaaataaactaattatctaacactttattcctataataaaataaagacactttcgttacatcgtaacactacaaaaaaaaagacat |
34748801 |
T |
|
| Q |
210 |
ttgggaccacagatttttcatttcttaagtcaaaattattataaatcattcattcnnnnnnnncttttctcgtgcacgcacgaaagaaattgacggaact |
309 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||| |
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| T |
34748800 |
ttgggaccacggatttttcatttcttaagtcaaaattattataaatcattcattcttttttttcttttctcgtgcacgcacgaaagaaattggcggaact |
34748701 |
T |
|
| Q |
310 |
ttgtcccgtgaacgatc----attgatggagatacatttgatatgagtttgcaattgatgtcaatgatttcaatgtatgctaaa-agaattagtcaatat |
404 |
Q |
| |
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|| || ||||||||||| ||||||||| |||||||||||||||||||||||| |||||||||||||||| |||||||||| ||||||||||||||| |
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| T |
34748700 |
ttatctcgtgaacgatcgatcattgatgga--tacatttgatatgagtttgcaattcatgtcaatgatttcaaagtatgctaaagagaattagtcaatat |
34748603 |
T |
|
| Q |
405 |
actcatttgcatttgattgttataaactgatagtggtgaatcaaacttaaaatgtagtgtttccacacacattttaaaatttattcatgcaaccatcgtc |
504 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
34748602 |
actcatttgcatttgattgttataaactgatagtggtgaatcaaacttaaaacgtagtgtttccacacacattttaaaatttattcatgcaaccattgtc |
34748503 |
T |
|
| Q |
505 |
atgttcattatcatcatgttcttcttgtttaagatatatgcagcggttccccaacacaagatttaagagacgtggt |
580 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
34748502 |
atgttcattatcatcatgttcttcttgtttaag--atatgcagcggttccccaacacaagatttaagagacgtggt |
34748429 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 74; Significance: 1e-33; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 9 - 161
Target Start/End: Complemental strand, 38464305 - 38464153
Alignment:
| Q |
9 |
agagagaagaagataattgttgaaatgattgattgattagaaatgaagcacatggtcaagtttaaatacaaccctcaaggctaaaagagtaaaatgacat |
108 |
Q |
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|||||||| ||||||||||||||||| ||||||||||| |||||| ||||| || |||||||||||||||||||| ||||||||||| |||||||||| |
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| T |
38464305 |
agagagaataagataattgttgaaat-attgattgatttcaaatgaggcacaaggccaagtttaaatacaaccctcgaggctaaaagattaaaatgacac |
38464207 |
T |
|
| Q |
109 |
aagataaatattattt-aaataaactaattatctaacactttattccaataaca |
161 |
Q |
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||| ||||| |||||| ||||||||||||||| |||| || ||||| |||||| |
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| T |
38464206 |
aagctaaatgttatttaaaataaactaattatgtaacgctaaattcctataaca |
38464153 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 9 - 154
Target Start/End: Complemental strand, 38450454 - 38450309
Alignment:
| Q |
9 |
agagagaagaagataattgttgaaatgattgattgattagaaatgaagcacatggtcaagtttaaatacaaccctcaaggctaaaagagtaaaatgacat |
108 |
Q |
| |
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|||||||| ||||||||||||||||| ||||||||||| |||||| ||||| |||| |||||||||||| |||| ||| |||||||||||||| |||| |
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| T |
38450454 |
agagagaataagataattgttgaaat-attgattgatttcaaatgaggcacaatgtcatgtttaaatacaatcctcgaggttaaaagagtaaaataacat |
38450356 |
T |
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| Q |
109 |
aagataaatattattt-aaataaactaattatctaacactttattcc |
154 |
Q |
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| | ||||| |||||| ||||||| |||||||||||| ||||||||| |
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| T |
38450355 |
acggtaaatgttatttaaaataaattaattatctaacgctttattcc |
38450309 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 49 - 102
Target Start/End: Original strand, 6646752 - 6646804
Alignment:
| Q |
49 |
aaatgaagcacatggtcaagtttaaatacaaccctcaaggctaaaagagtaaaa |
102 |
Q |
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|||||||||||| || ||||||||||||| ||||||||||||||||| |||||| |
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| T |
6646752 |
aaatgaagcacaaggccaagtttaaatac-accctcaaggctaaaagggtaaaa |
6646804 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 59; Significance: 1e-24; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 16 - 154
Target Start/End: Original strand, 26371110 - 26371242
Alignment:
| Q |
16 |
agaagataattgttgaaatgattgattgattagaaatgaagcacatggtcaagtttaaatacaaccctcaaggctaaaagagtaaaatgacataagataa |
115 |
Q |
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||||||||||||||||| ||||||||||| |||||| ||| | || ||||| |||||||||||||||||||||||||||||||||||||| ||| |
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| T |
26371110 |
agaagataattgttgaat--attgattgattgcaaatgaggcagaaggccaagt----atacaaccctcaaggctaaaagagtaaaatgacataaggtaa |
26371203 |
T |
|
| Q |
116 |
atattatttaaataaactaattatctaacactttattcc |
154 |
Q |
| |
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|| |||||||| |||||| |||||||||||||||||| |
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| T |
26371204 |
atgctatttaaaataactaaatatctaacactttattcc |
26371242 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 9 - 106
Target Start/End: Complemental strand, 20868264 - 20868166
Alignment:
| Q |
9 |
agagagaagaagataattgttgaaatgattgattgattag-aaatgaagcacatggtcaagtttaaatacaaccctcaaggctaaaagagtaaaatgac |
106 |
Q |
| |
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||||||||||||||||||||| ||||| |||||||||| |||||| |||| | || |||||||||||| |||||||||||||||||||||||| |
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| T |
20868264 |
agagagaagaagataattgttaaaatgtttgattgattgtcaaatgaggcaccaagccatatttaaatacaactatcaaggctaaaagagtaaaatgac |
20868166 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0018 (Bit Score: 52; Significance: 2e-20; HSPs: 1)
Name: scaffold0018
Description:
Target: scaffold0018; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 12 - 127
Target Start/End: Original strand, 187721 - 187834
Alignment:
| Q |
12 |
gagaagaagataattgttgaaatgattgattgattagaaatgaagcacatggtcaagtttaaatacaaccctcaaggctaaaagagtaaaatgacataag |
111 |
Q |
| |
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||||| |||||||||||||||||| || ||||||| |||||| ||||| | ||||||||||||| ||||||||| |||||| |||||||| ||||||| |
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| T |
187721 |
gagaataagataattgttgaaatgtttaattgattgcaaatgaggcaca-agccaagtttaaatactaccctcaagactaaaa-agtaaaataacataag |
187818 |
T |
|
| Q |
112 |
ataaatattatttaaa |
127 |
Q |
| |
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||||||||||||||| |
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| T |
187819 |
gtaaatattatttaaa |
187834 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 16 - 116
Target Start/End: Complemental strand, 39624120 - 39624020
Alignment:
| Q |
16 |
agaagataattgttgaaatgattgattgattagaaatgaagcacatggtcaagtttaaatacaaccctcaaggctaaaagagtaaaatgacataagataa |
115 |
Q |
| |
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|||||||||||||||||||| |||||||||| |||| | | ||| | ||| |||||||||||||||| |||||||| ||||| |||||||||| |||| |
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| T |
39624120 |
agaagataattgttgaaatgtttgattgatttcaaataaggtacaagaccaattttaaatacaaccctcgaggctaaatgagtataatgacataaaataa |
39624021 |
T |
|
| Q |
116 |
a |
116 |
Q |
| |
|
| |
|
|
| T |
39624020 |
a |
39624020 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000009; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 9 - 101
Target Start/End: Complemental strand, 22869675 - 22869583
Alignment:
| Q |
9 |
agagagaagaagataattgttgaaatgattgattgatta-gaaatgaagcacatggtcaagtttaaatacaaccctcaaggctaaaagagtaaa |
101 |
Q |
| |
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|||||||||||||||||||||||||| ||||||||||| |||||| ||||| | | |||||||||||| ||||||||||||||||||| |
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| T |
22869675 |
agagagaagaagataattgttgaaatatttgattgattaccaaatgaggcacaatg-ccttcttaaatacaaccatcaaggctaaaagagtaaa |
22869583 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 9 - 47
Target Start/End: Complemental strand, 22803180 - 22803142
Alignment:
| Q |
9 |
agagagaagaagataattgttgaaatgattgattgatta |
47 |
Q |
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|||||||||||||||||||||||||| ||||||||||| |
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|
| T |
22803180 |
agagagaagaagataattgttgaaatatttgattgatta |
22803142 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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