View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3036_low_11 (Length: 254)
Name: NF3036_low_11
Description: NF3036
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3036_low_11 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 150; Significance: 2e-79; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 50 - 254
Target Start/End: Complemental strand, 24914717 - 24914516
Alignment:
| Q |
50 |
aatgttctttgtttatatttatatacttattcagtagtgggcttagatgttttggaannnnnnncaggaaaaaattgttgatcttgcaatcaagtcgtct |
149 |
Q |
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| T |
24914717 |
aatgttttttgtttatatttatatacttgttcagtagtgggcttagatgttttggattttttttcaggaaaaaattgttgatcttgcaatcaagtcgtct |
24914618 |
T |
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| Q |
150 |
aactctgctacgcaagtaaacattctcccagaaagagttgttgatcatacaaacaagtcgtcagacacttctgcgcaagcaaacattctcaacattctcc |
249 |
Q |
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| T |
24914617 |
aactctgctgcgcaagtaaacattctcccagaaagagttgttgatcatacaaaccagtcgtcagacacttctgcgcaagca---attctcaacattctcc |
24914521 |
T |
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| Q |
250 |
cagaa |
254 |
Q |
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||||| |
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| T |
24914520 |
cagaa |
24914516 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 168 - 228
Target Start/End: Complemental strand, 24914530 - 24914470
Alignment:
| Q |
168 |
aacattctcccagaaagagttgttgatcatacaaacaagtcgtcagacacttctgcgcaag |
228 |
Q |
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| T |
24914530 |
aacattctcccagaaagagttgtttatcatgcaaacaagtcatcagattctgctgcgcaag |
24914470 |
T |
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