View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3036_low_14 (Length: 249)
Name: NF3036_low_14
Description: NF3036
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3036_low_14 |
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Alignment Details
Target: chr7 (Bit Score: 227; Significance: 1e-125; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 8569282 - 8569520
Alignment:
| Q |
1 |
ttgttcatagcagattcaaagatgatctcaagctccttcagaaagtccacaaacacaaaggtatcttcttgctggctatcaccaatcaaactttttccct |
100 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8569282 |
ttgttcatagcagattcaaagatgctctcaagctccttcagaaagtccacaaacacaaaggtatcttcttgctggctatcaccaatcaaactttttccct |
8569381 |
T |
|
| Q |
101 |
tggtcattgctgagttgatcttctctttgtctacaggagtgagctttgagctagtactatcattcttcattacttttcttactttgtaaagataatcatc |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
8569382 |
tggtcattgctgagttgatcttctctttgtctacaggagtgagctttgagctagtactatcgttcttcattacttttcttactttgtaaagataatcatc |
8569481 |
T |
|
| Q |
201 |
caaagcatttcttgcttcaactttctctttgaacttcat |
239 |
Q |
| |
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|||||||||||||||||||||||||| |||||||||||| |
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| T |
8569482 |
caaagcatttcttgcttcaactttctttttgaacttcat |
8569520 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 8580668 - 8580902
Alignment:
| Q |
1 |
ttgttcatagcagattcaaagatgatctcaagctccttcagaaagtccacaaacacaaaggtatcttcttgctggctatcaccaatcaaactttttccct |
100 |
Q |
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|||||||| | ||||||||||||| |||||||||||||||||||||||||||||||||| | |||||| || ||| | | | |||||||||||||||||| |
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| T |
8580668 |
ttgttcatggaagattcaaagatgctctcaagctccttcagaaagtccacaaacacaaatgcatcttcctgttggttgttatcaatcaaactttttccct |
8580767 |
T |
|
| Q |
101 |
tggtcattgctgagttgatcttctctttgtctacaggagtgagctttgagctagtactatcattcttcattacttttcttactttgtaaagataatcatc |
200 |
Q |
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| T |
8580768 |
ttatcattgcagaattaatcttttctttgtctacagtggtgagctttgaactaacacaattatcctccattactttcctcactttgtaaagataatcgtc |
8580867 |
T |
|
| Q |
201 |
caaagcatttcttgcttcaactttctctttgaact |
235 |
Q |
| |
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|||||||||| |||||| |||||||| ||||||| |
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| T |
8580868 |
caaagcatttattgctttaactttcttcttgaact |
8580902 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 8544604 - 8544842
Alignment:
| Q |
1 |
ttgttcatagcagattcaaagatgatctcaagctccttcagaaagtccacaaacacaaaggtatcttcttgctggctatcaccaatcaaactttttccct |
100 |
Q |
| |
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|||||||| | ||||||||||||| ||||||||||||||| |||||||||||||||||| | |||||| || ||| | | | |||||||||||||||||| |
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| T |
8544604 |
ttgttcatggaagattcaaagatgctctcaagctccttcaaaaagtccacaaacacaaatgcatcttcctgttggttgttatcaatcaaactttttccct |
8544703 |
T |
|
| Q |
101 |
tggtcattgctgagttgatcttctctttgtctacaggagtgagctttgagctagtactatcattcttcattacttttcttactttgtaaagataatcatc |
200 |
Q |
| |
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| ||||||| || ||||| ||| |||||||||||| | |||||| || || || ||||| |||||||||||| || || ||||||||||||| || |
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| T |
8544704 |
ttatcattgcagaattgatattcattttgtctacaggggcgagcttggaattaacacaatcatccttcattactttcctcacattgtaaagataatactc |
8544803 |
T |
|
| Q |
201 |
caaagcatttcttgcttcaactttctctttgaacttcat |
239 |
Q |
| |
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|||||||||||||||||||||||| | | |||||||||| |
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| T |
8544804 |
caaagcatttcttgcttcaactttttttctgaacttcat |
8544842 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 8575270 - 8575504
Alignment:
| Q |
1 |
ttgttcatagcagattcaaagatgatctcaagctccttcagaaagtccacaaacacaaaggtatcttcttgctggctatcaccaatcaaactttttccct |
100 |
Q |
| |
|
|||||| ||| ||||||||||||| ||||||||||||| || ||||| ||||| ||| | ||||||| |||||| || || | |||||||||| ||||| |
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| T |
8575270 |
ttgttcttagaagattcaaagatgctctcaagctcctttagcaagtctacaaaaacagacatatcttcctgctggttaccatcgatcaaactttctccct |
8575369 |
T |
|
| Q |
101 |
tggtcattgctgagttgatcttctctttgtctacaggagtgagctttgagctagtactatcattcttcattacttttcttactttgtaaagataatcatc |
200 |
Q |
| |
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| |||||||||| || |||||||||||||| ||||| ||||||||||| | | || ||||| |||||||| ||| || | |||| ||||||||| || |
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| T |
8575370 |
ttatcattgctgaattaatcttctctttgtcgacaggggtgagctttgaaccaacaccatcatccttcattaatttcctcgcattgtgaagataatcgtc |
8575469 |
T |
|
| Q |
201 |
caaagcatttcttgcttcaactttctctttgaact |
235 |
Q |
| |
|
||| |||||| ||||| |||||||| ||||||| |
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| T |
8575470 |
caatgcatttattgctgtaactttcttcttgaact |
8575504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 11 - 226
Target Start/End: Complemental strand, 8384066 - 8383851
Alignment:
| Q |
11 |
cagattcaaagatgatctcaagctccttcagaaagtccacaaacacaaaggtatcttcttgctggctatcaccaatcaaactttttcccttggtcattgc |
110 |
Q |
| |
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|||||||||||||| ||||||||||| |||||||||||||||| ||||| || |||| |||| | || || ||||||| ||||| ||||| |||| || |
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| T |
8384066 |
cagattcaaagatgctctcaagctccatcagaaagtccacaaatacaaatgtttctttgtgcttgttaccatcaatcaaccttttccccttcatcatagc |
8383967 |
T |
|
| Q |
111 |
tgagttgatcttctctttgtctacaggagtgagctttgagctagtactatcattcttcattacttttcttactttgtaaagataatcatccaaagcattt |
210 |
Q |
| |
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|| |||||||| |||||||| || ||||| |||| || |||||||| ||||||||||| || | |||||||||||||| ||||||||||| |
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| T |
8383966 |
agaattgatctttattttgtctattgggttgagcattgaagtaacactatcatctttcattactttcctcatgttgtaaagataatcgtccaaagcattc |
8383867 |
T |
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| Q |
211 |
cttgcttcaactttct |
226 |
Q |
| |
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|||||| |||||||| |
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| T |
8383866 |
attgctttaactttct |
8383851 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 8608888 - 8608946
Alignment:
| Q |
1 |
ttgttcatagcagattcaaagatgatctcaagctccttcagaaagtccacaaacacaaa |
59 |
Q |
| |
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||||||| |||||||||||| || |||||||||||||||||||||||||||||||||| |
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| T |
8608888 |
ttgttcaaagcagattcaaatatcttctcaagctccttcagaaagtccacaaacacaaa |
8608946 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 156 - 239
Target Start/End: Original strand, 8601097 - 8601180
Alignment:
| Q |
156 |
actatcattcttcattacttttcttactttgtaaagataatcatccaaagcatttcttgcttcaactttctctttgaacttcat |
239 |
Q |
| |
|
|||||||| ||||||||||||||| | |||||||||||||||||| | |||| |||||| |||||||| ||||||||||| |
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| T |
8601097 |
actatcatccttcattacttttctcatagtgtaaagataatcatccagatcattcattgctttaactttcttcttgaacttcat |
8601180 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 4 - 239
Target Start/End: Original strand, 12527478 - 12527713
Alignment:
| Q |
4 |
ttcatagcagattcaaagatgatctcaagctccttcagaaagtccacaaacacaaaggtatcttcttgctggctatcaccaatcaaactttttcccttgg |
103 |
Q |
| |
|
|||| ||||||| |||||||| ||||||||||||||| |||||||| ||||||||| |||||||| |||| | | || ||||||| ||||||||||| |
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| T |
12527478 |
ttcaaagcagatccaaagatgctctcaagctccttcaaaaagtccaaaaacacaaatgtatcttcctgcttgtttccatcaatcaagctttttcccttta |
12527577 |
T |
|
| Q |
104 |
tcattgctgagttgatcttctctttgtctacaggagtgagctttgagctagtactatcattcttcattacttttcttactttgtaaagataatcatccaa |
203 |
Q |
| |
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||||||| || | ||| |||||||||||| || ||| | || ||| || || || |||||| | ||| || || | ||||||||| |||||||| |
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| T |
12527578 |
tcattgcagaatctatcaaaattttgtctacaggtgtcagcatggaactaacacaattatccttcatgattttcctcacatggtaaagatagtcatccaa |
12527677 |
T |
|
| Q |
204 |
agcatttcttgcttcaactttctctttgaacttcat |
239 |
Q |
| |
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|||||| |||||| |||||||| |||||||||||| |
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| T |
12527678 |
agcattgattgctttaactttctttttgaacttcat |
12527713 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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