View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3036_low_16 (Length: 230)
Name: NF3036_low_16
Description: NF3036
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3036_low_16 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 44; Significance: 3e-16; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 177 - 220
Target Start/End: Original strand, 19539001 - 19539044
Alignment:
| Q |
177 |
catatcatgagtactatataatgaacttgaagtttgttattcat |
220 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19539001 |
catatcatgagtactatataatgaacttgaagtttgttattcat |
19539044 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 177 - 220
Target Start/End: Original strand, 19549170 - 19549213
Alignment:
| Q |
177 |
catatcatgagtactatataatgaacttgaagtttgttattcat |
220 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19549170 |
catatcatgagtactatataatgaacttgaagtttgttattcat |
19549213 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 182 - 220
Target Start/End: Original strand, 19563421 - 19563459
Alignment:
| Q |
182 |
catgagtactatataatgaacttgaagtttgttattcat |
220 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19563421 |
catgagtactatataatgaacttgaagtttgttattcat |
19563459 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 177 - 212
Target Start/End: Original strand, 19581331 - 19581366
Alignment:
| Q |
177 |
catatcatgagtactatataatgaacttgaagtttg |
212 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||| |
|
|
| T |
19581331 |
catatcatgagtactatataatgaagttgaagtttg |
19581366 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 177 - 212
Target Start/End: Original strand, 19593476 - 19593511
Alignment:
| Q |
177 |
catatcatgagtactatataatgaacttgaagtttg |
212 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||| |
|
|
| T |
19593476 |
catatcatgagtactatataatgaagttgaagtttg |
19593511 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 191 - 220
Target Start/End: Complemental strand, 32151082 - 32151053
Alignment:
| Q |
191 |
tatataatgaacttgaagtttgttattcat |
220 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
32151082 |
tatataatgaacttgaagtttgttattcat |
32151053 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 177 - 220
Target Start/End: Original strand, 18025114 - 18025157
Alignment:
| Q |
177 |
catatcatgagtactatataatgaacttgaagtttgttattcat |
220 |
Q |
| |
|
|||||||| |||||||||||||||| || ||||||||||||||| |
|
|
| T |
18025114 |
catatcataagtactatataatgaatttaaagtttgttattcat |
18025157 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University