View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3036_low_17 (Length: 223)

Name: NF3036_low_17
Description: NF3036
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3036_low_17
NF3036_low_17
[»] chr7 (11 HSPs)
chr7 (21-223)||(43057406-43057608)
chr7 (25-223)||(152015-152213)
chr7 (21-223)||(35089831-35090033)
chr7 (21-223)||(30110960-30111162)
chr7 (21-223)||(27418367-27418569)
chr7 (41-223)||(40097251-40097434)
chr7 (117-223)||(47914878-47914984)
chr7 (21-120)||(47914054-47914153)
chr7 (42-223)||(39301002-39301172)
chr7 (116-223)||(46037170-46037277)
chr7 (23-51)||(33474820-33474848)
[»] chr4 (18 HSPs)
chr4 (21-223)||(8583730-8583932)
chr4 (21-223)||(42218171-42218373)
chr4 (23-223)||(44930032-44930232)
chr4 (22-223)||(3435689-3435884)
chr4 (68-223)||(8880601-8880756)
chr4 (42-223)||(52109563-52109744)
chr4 (68-222)||(25935945-25936098)
chr4 (41-223)||(26336225-26336407)
chr4 (47-223)||(47685301-47685477)
chr4 (45-223)||(45332823-45333001)
chr4 (45-223)||(45340513-45340691)
chr4 (45-223)||(42720876-42721055)
chr4 (80-223)||(33449963-33450106)
chr4 (42-223)||(54509871-54510050)
chr4 (22-203)||(7820239-7820405)
chr4 (42-223)||(40143933-40144098)
chr4 (116-223)||(38230929-38231036)
chr4 (23-51)||(56397742-56397770)
[»] chr2 (11 HSPs)
chr2 (21-223)||(29941102-29941304)
chr2 (21-223)||(45547088-45547290)
chr2 (27-223)||(6289232-6289428)
chr2 (42-220)||(11534995-11535173)
chr2 (42-223)||(24193232-24193413)
chr2 (41-223)||(34028677-34028859)
chr2 (41-223)||(20157502-20157684)
chr2 (47-223)||(11998169-11998344)
chr2 (68-223)||(24193706-24193868)
chr2 (100-188)||(45485543-45485631)
chr2 (150-223)||(18176323-18176396)
[»] chr3 (19 HSPs)
chr3 (22-223)||(24150558-24150759)
chr3 (24-223)||(38629528-38629727)
chr3 (23-223)||(35731089-35731289)
chr3 (21-209)||(26005580-26005768)
chr3 (21-223)||(30588996-30589199)
chr3 (22-223)||(50900173-50900374)
chr3 (21-223)||(36054732-36054934)
chr3 (22-221)||(26293293-26293492)
chr3 (41-223)||(46251948-46252130)
chr3 (41-223)||(13662705-13662887)
chr3 (83-223)||(26005770-26005910)
chr3 (23-223)||(19551885-19552075)
chr3 (42-223)||(27593309-27593490)
chr3 (70-223)||(39338073-39338224)
chr3 (41-223)||(36786128-36786309)
chr3 (54-223)||(26555971-26556123)
chr3 (80-221)||(38682585-38682728)
chr3 (84-223)||(52023987-52024126)
chr3 (195-223)||(53183972-53184000)
[»] chr8 (23 HSPs)
chr8 (21-223)||(7148197-7148399)
chr8 (21-223)||(41386595-41386797)
chr8 (21-223)||(29260001-29260203)
chr8 (21-223)||(2112948-2113150)
chr8 (24-223)||(4655204-4655403)
chr8 (25-223)||(40265010-40265208)
chr8 (23-223)||(42275129-42275330)
chr8 (22-223)||(41965526-41965725)
chr8 (22-223)||(43605090-43605291)
chr8 (68-223)||(10802543-10802698)
chr8 (41-223)||(28620001-28620183)
chr8 (75-223)||(9457700-9457848)
chr8 (42-222)||(37567118-37567298)
chr8 (41-223)||(4302551-4302735)
chr8 (42-223)||(30382420-30382601)
chr8 (69-223)||(8502789-8502943)
chr8 (91-223)||(9209193-9209325)
chr8 (69-222)||(35142200-35142353)
chr8 (22-102)||(41965324-41965404)
chr8 (185-222)||(1605902-1605939)
chr8 (68-121)||(40013271-40013324)
chr8 (21-52)||(9457841-9457872)
chr8 (187-223)||(40013363-40013399)
[»] chr1 (15 HSPs)
chr1 (22-223)||(45318617-45318818)
chr1 (23-223)||(26882553-26882753)
chr1 (21-223)||(52705550-52705752)
chr1 (42-223)||(36402404-36402585)
chr1 (41-223)||(1928149-1928331)
chr1 (45-223)||(29208912-29209090)
chr1 (42-223)||(33243060-33243237)
chr1 (42-223)||(33263233-33263410)
chr1 (42-223)||(10896957-10897138)
chr1 (75-173)||(45534991-45535089)
chr1 (79-164)||(9831782-9831867)
chr1 (171-223)||(9831447-9831499)
chr1 (116-223)||(19007400-19007507)
chr1 (116-223)||(48194747-48194854)
chr1 (193-223)||(45534963-45534993)
[»] scaffold0016 (1 HSPs)
scaffold0016 (21-223)||(81507-81709)
[»] chr6 (13 HSPs)
chr6 (21-223)||(6476438-6476640)
chr6 (75-223)||(29834064-29834212)
chr6 (75-223)||(29865498-29865646)
chr6 (49-221)||(3110038-3110210)
chr6 (41-223)||(30878009-30878191)
chr6 (42-223)||(10643758-10643941)
chr6 (125-223)||(7858203-7858301)
chr6 (116-223)||(709071-709178)
chr6 (116-223)||(7100321-7100428)
chr6 (116-223)||(8794202-8794309)
chr6 (22-52)||(29834041-29834071)
chr6 (22-52)||(29865475-29865505)
chr6 (155-223)||(5957286-5957354)
[»] chr5 (5 HSPs)
chr5 (22-223)||(40410747-40410948)
chr5 (42-223)||(6828537-6828719)
chr5 (68-223)||(17518586-17518741)
chr5 (68-223)||(10571268-10571423)
chr5 (116-223)||(2276025-2276132)
[»] scaffold0153 (1 HSPs)
scaffold0153 (21-223)||(34539-34741)
[»] scaffold0237 (2 HSPs)
scaffold0237 (75-223)||(21192-21340)
scaffold0237 (23-52)||(21170-21199)
[»] scaffold0202 (1 HSPs)
scaffold0202 (41-223)||(16303-16469)
[»] scaffold0472 (1 HSPs)
scaffold0472 (116-200)||(1705-1789)


Alignment Details
Target: chr7 (Bit Score: 191; Significance: 1e-104; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 21 - 223
Target Start/End: Original strand, 43057406 - 43057608
Alignment:
Q  21 tgaatttggaagagtattacaaaatctcaaggctatgtgttgaagatagaaaagtctcaaggctaggtgtgagattgttagtaggtacattttacactaa 120  Q
    |||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43057406 tgaatttggaagagtattacaaaatctcaaggctatgtgtgggagatagaaaagtctcaaggctaggtgtgagattgttagtaggtacattttacactaa 43057505  T
Q  121 acaatctcacaaaatctattactcacaacaatccattaaaatccgtagagttttgaataccagtagacaatttttaagttatgcaaaatctcaattgaat 220  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43057506 acaatctcacaaaatccattactcacaacaatccattaaaatccgtagagttttgaataccagtagacaatttttaagttatgcaaaatctcaattgaat 43057605  T
Q  221 acc 223  Q
    |||    
T  43057606 acc 43057608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 25 - 223
Target Start/End: Complemental strand, 152213 - 152015
Alignment:
Q  25 tttggaagagtattacaaaatctcaaggctatgtgttgaagatagaaaagtctcaaggctaggtgtgagattgttagtaggtacattttacactaaacaa 124  Q
    ||||| ||||||||||||||||| |||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  152213 tttggtagagtattacaaaatctaaaggctatgtgtgggagatagaaaagtctcaaggctaggtgtgagattgttagtaggtacattttacactaaacaa 152114  T
Q  125 tctcacaaaatctattactcacaacaatccattaaaatccgtagagttttgaataccagtagacaatttttaagttatgcaaaatctcaattgaatacc 223  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  152113 tctcacaaaatccattactcacaacaatccattaaaatccgtagagttttgaataccattagacaatttttaagttatgcaaaatctcaattgaatacc 152015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 21 - 223
Target Start/End: Original strand, 35089831 - 35090033
Alignment:
Q  21 tgaatttggaagagtattacaaaatctcaaggctatgtgttgaagatagaaaagtctcaaggctaggtgtgagattgttagtaggtacattttacactaa 120  Q
    |||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| ||||||||||||||||||||||||||||||| || ||    
T  35089831 tgaatttggaagagtattacaaaatctcaaggctatgtgtgggagatagaaaagtctcaaggttaggtgtgagattgttagtaggtacattttataccaa 35089930  T
Q  121 acaatctcacaaaatctattactcacaacaatccattaaaatccgtagagttttgaataccagtagacaatttttaagttatgcaaaatctcaattgaat 220  Q
    |||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35089931 acaatctcacaaaattcattactcacaacaatccattaaaatccgtagagttttgaataccagtagacaatttttaagttatgcaaaatctcaattgaat 35090030  T
Q  221 acc 223  Q
    |||    
T  35090031 acc 35090033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 21 - 223
Target Start/End: Complemental strand, 30111162 - 30110960
Alignment:
Q  21 tgaatttggaagagtattacaaaatctcaaggctatgtgttgaagatagaaaagtctcaaggctaggtgtgagattgttagtaggtacattttacactaa 120  Q
    |||||||||||||||||||||||||||||||||||||||| | ||| | ||||||||||||| ||||||||||||||||| ||| |||||||||||||||    
T  30111162 tgaatttggaagagtattacaaaatctcaaggctatgtgtgggagacaaaaaagtctcaaggttaggtgtgagattgttaatagatacattttacactaa 30111063  T
Q  121 acaatctcacaaaatctattactcacaacaatccattaaaatccgtagagttttgaataccagtagacaatttttaagttatgcaaaatctcaattgaat 220  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||  || ||||||||||||||||||||||||||||||||||||    
T  30111062 acaatctcacaaaatccattactcacaacaatccattaaaatccgtagagttttgaataatagcagacaatttttaagttatgcaaaatctcaattgaat 30110963  T
Q  221 acc 223  Q
    |||    
T  30110962 acc 30110960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 21 - 223
Target Start/End: Original strand, 27418367 - 27418569
Alignment:
Q  21 tgaatttggaagagtattacaaaatctcaaggctatgtgttgaagatagaaaagtctcaaggctaggtgtgagattgttagtaggtacattttacactaa 120  Q
    |||||||||||||||||||||||||||||||||| ||||| | |||   ||||||||||||| ||||||||||||||||| ||| |||||||||||||||    
T  27418367 tgaatttggaagagtattacaaaatctcaaggctttgtgtgggagaccaaaaagtctcaaggttaggtgtgagattgttaatagatacattttacactaa 27418466  T
Q  121 acaatctcacaaaatctattactcacaacaatccattaaaatccgtagagttttgaataccagtagacaatttttaagttatgcaaaatctcaattgaat 220  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||| || ||||||||||||||||||||||||||||||||||||    
T  27418467 acaatctcacaaaatccattactcacaacaatccattaaaatccgtagagttttgattactagcagacaatttttaagttatgcaaaatctcaattgaat 27418566  T
Q  221 acc 223  Q
    |||    
T  27418567 acc 27418569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 41 - 223
Target Start/End: Complemental strand, 40097434 - 40097251
Alignment:
Q  41 aaaatctcaaggctatgtgttgaagatagaaaa-gtctcaaggctaggtgtgagattgttagtaggtacattttacactaaacaatctcacaaaatctat 139  Q
    ||||||||||| |||||||| | ||| | |||| ||||||| ||||||||||||||||||||||| | ||||||||| |||| | |||||||||||| ||    
T  40097434 aaaatctcaagactatgtgtgggagacaaaaaaagtctcaaagctaggtgtgagattgttagtagatgcattttacattaaaaagtctcacaaaatccat 40097335  T
Q  140 tactcacaacaatccattaaaatccgtagagttttgaataccagtagacaatttttaagttatgcaaaatctcaattgaatacc 223  Q
    || ||| |||||||||||||||||| |||| |||||||||||| ||||||||||||||||| |||||||||| |||||||||||    
T  40097334 tagtcataacaatccattaaaatccttagaattttgaataccaatagacaatttttaagttgtgcaaaatctgaattgaatacc 40097251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 117 - 223
Target Start/End: Original strand, 47914878 - 47914984
Alignment:
Q  117 ctaaacaatctcacaaaatctattactcacaacaatccattaaaatccgtagagttttgaataccagtagacaatttttaagttatgcaaaatctcaatt 216  Q
    |||||||||||||||||||| ||||||||||||||||||| |||||| |||||||||||||||| || ||||||||||||||||||||||||||||||||    
T  47914878 ctaaacaatctcacaaaatccattactcacaacaatccataaaaatctgtagagttttgaatactagcagacaatttttaagttatgcaaaatctcaatt 47914977  T
Q  217 gaatacc 223  Q
    |||||||    
T  47914978 gaatacc 47914984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 21 - 120
Target Start/End: Original strand, 47914054 - 47914153
Alignment:
Q  21 tgaatttggaagagtattacaaaatctcaaggctatgtgttgaagatagaaaagtctcaaggctaggtgtgagattgttagtaggtacattttacactaa 120  Q
    |||||||||||||||||||||||||||||||||||||||| | ||| | |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47914054 tgaatttggaagagtattacaaaatctcaaggctatgtgtgggagacaaaaaagtctcaaggctaggtgtgagattgttagtaggtacattttacactaa 47914153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 42 - 223
Target Start/End: Original strand, 39301002 - 39301172
Alignment:
Q  42 aaatctcaaggctatgtgttgaagatagaaaa-gtctcaaggctaggtgtgagattgttagtaggtacattttacactaaacaatctcacaaaatctatt 140  Q
    ||||||||||||||| ||| | ||| | |||| ||||||||| ||||||||||||||||||||||||||||||||| ||||            ||| |||    
T  39301002 aaatctcaaggctatatgtgggagacaaaaaaagtctcaaggttaggtgtgagattgttagtaggtacattttacattaaa------------atccatt 39301089  T
Q  141 actcacaacaatccattaaaatccgtagagttttgaataccagtagacaatttttaagttatgcaaaatctcaattgaatacc 223  Q
    ||||||||||||| |||||||||| || | |||||||||||| ||||||||||||||||| ||||||||||||||||||||||    
T  39301090 actcacaacaatctattaaaatccttacaattttgaataccaatagacaatttttaagttgtgcaaaatctcaattgaatacc 39301172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 116 - 223
Target Start/End: Original strand, 46037170 - 46037277
Alignment:
Q  116 actaaacaatctcacaaaatctattactcacaacaatccattaaaatccgtagagttttgaataccagtagacaatttttaagttatgcaaaatctcaat 215  Q
    |||||| | |||||||||||| ||| |   ||| ||||||| ||||||  |||| |||||||||||| |||||||||  ||||| |||  ||||||||||    
T  46037170 actaaaaagtctcacaaaatccattccatccaagaatccatcaaaatctatagacttttgaataccaatagacaattcataagtcatgagaaatctcaat 46037269  T
Q  216 tgaatacc 223  Q
    ||||||||    
T  46037270 tgaatacc 46037277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 51
Target Start/End: Complemental strand, 33474848 - 33474820
Alignment:
Q  23 aatttggaagagtattacaaaatctcaag 51  Q
    |||||||||||||||||||||||||||||    
T  33474848 aatttggaagagtattacaaaatctcaag 33474820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 187; Significance: 1e-101; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 21 - 223
Target Start/End: Original strand, 8583730 - 8583932
Alignment:
Q  21 tgaatttggaagagtattacaaaatctcaaggctatgtgttgaagatagaaaagtctcaaggctaggtgtgagattgttagtaggtacattttacactaa 120  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8583730 tgaatttggaagagtattacaaaatctcaaggctatgtgttggagatagaaaagtctcaaggctaggtgtgagattgttagtaggtacattttacactaa 8583829  T
Q  121 acaatctcacaaaatctattactcacaacaatccattaaaatccgtagagttttgaataccagtagacaatttttaagttatgcaaaatctcaattgaat 220  Q
    |||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  8583830 acaatctcacaaaattcattactcacaacaatccattaaaatccgtagagttttgaataccagtagacaatttttaagttatgcaaaatcttaattgaat 8583929  T
Q  221 acc 223  Q
    |||    
T  8583930 acc 8583932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 179; E-Value: 9e-97
Query Start/End: Original strand, 21 - 223
Target Start/End: Original strand, 42218171 - 42218373
Alignment:
Q  21 tgaatttggaagagtattacaaaatctcaaggctatgtgttgaagatagaaaagtctcaaggctaggtgtgagattgttagtaggtacattttacactaa 120  Q
    ||||||||||||| |||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42218171 tgaatttggaagaatattacaaaatctcaaggctatgtgtaggagatagaaaagtctcaaggctaggtgtgagattgttagtaggtacattttacactaa 42218270  T
Q  121 acaatctcacaaaatctattactcacaacaatccattaaaatccgtagagttttgaataccagtagacaatttttaagttatgcaaaatctcaattgaat 220  Q
    |||||||||||||||  |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  42218271 acaatctcacaaaattcattactcacaacaatccattaaaatccgtagagttttgaatatcagtagacaatttttaagttatgcaaaatctcaattgaat 42218370  T
Q  221 acc 223  Q
    |||    
T  42218371 acc 42218373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 23 - 223
Target Start/End: Complemental strand, 44930232 - 44930032
Alignment:
Q  23 aatttggaagagtattacaaaatctcaaggctatgtgttgaagatagaaaagtctcaaggctaggtgtgagattgttagtaggtacattttacactaaac 122  Q
    |||||||||||||||||||||||||||||||||||||| | |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  44930232 aatttggaagagtattacaaaatctcaaggctatgtgtgggagatagaaaaatctcaaggctaggtgtgagattgttagtaggtacattttacactaaac 44930133  T
Q  123 aatctcacaaaatctattactcacaacaatccattaaaatccgtagagttttgaataccagtagacaatttttaagttatgcaaaatctcaattgaatac 222  Q
    ||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  44930132 aatctcacaaaatcctttactcacaacaatccattaaaatccgtagagttttgaatacccgtagacaatttttaagttatgcaaaatctcaattgaatac 44930033  T
Q  223 c 223  Q
    |    
T  44930032 c 44930032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 171; E-Value: 5e-92
Query Start/End: Original strand, 22 - 223
Target Start/End: Original strand, 3435689 - 3435884
Alignment:
Q  22 gaatttggaagagtattacaaaatctcaaggctatgtgttgaagatagaaaagtctcaaggctaggtgtgagattgttagtaggtacattttacactaaa 121  Q
    ||||||||||||||||||||||||||||||||||||      ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3435689 gaatttggaagagtattacaaaatctcaaggctatg------agatagaaaagtctcaaggctaggtgtgagattgttagtaggtacattttacactaaa 3435782  T
Q  122 caatctcacaaaatctattactcacaacaatccattaaaatccgtagagttttgaataccagtagacaatttttaagttatgcaaaatctcaattgaata 221  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||    
T  3435783 caatctcacaaaatctattactcacaacaatccattaaaatccgtagagttttgaataccagcacacaatttttaagttatgcaaaatctcaattgaata 3435882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 68 - 223
Target Start/End: Complemental strand, 8880756 - 8880601
Alignment:
Q  68 agaaaagtctcaaggctaggtgtgagattgttagtaggtacattttacactaaacaatctcacaaaatctattactcacaacaatccattaaaatccgta 167  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||    
T  8880756 agaaaagtctcaaggctaggtgtgagattgttagtaggtacattttacactaaacaatctcacaaaattcattactcacaacaatccattaaaatccgta 8880657  T
Q  168 gagttttgaataccagtagacaatttttaagttatgcaaaatctcaattgaatacc 223  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  8880656 gagttttgaatactagtagacaatttttaagttatgcaaaatctcaattgaatacc 8880601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 42 - 223
Target Start/End: Complemental strand, 52109744 - 52109563
Alignment:
Q  42 aaatctcaaggctatgtgttgaagatagaaaagtctcaaggctaggtgtgagattgttagtaggtacattttacactaaacaatctcacaaaatctatta 141  Q
    ||||||||||| ||||||| | ||| |||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||| ||||    
T  52109744 aaatctcaaggttatgtgtgggagacagaaaagtctcaaggctaggtgtgggattgttagtaggtacattttacattaaacaatctcacaaaatccatta 52109645  T
Q  142 ctcacaacaatccattaaaatccgtagagttttgaataccagtagacaatttttaagttatgcaaaatctcaattgaatacc 223  Q
    |||||||||||||||||||||||||||||||||||||| | ||| |||||||||||||||||||||||||||||||||||||    
T  52109644 ctcacaacaatccattaaaatccgtagagttttgaatatcggtatacaatttttaagttatgcaaaatctcaattgaatacc 52109563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 68 - 222
Target Start/End: Complemental strand, 25936098 - 25935945
Alignment:
Q  68 agaaaagtctcaaggctaggtgtgagattgttagtaggtacattttacactaaacaatctcacaaaatctattactcacaacaatccattaaaatccgta 167  Q
    ||||||||||||||||||| ||||||||||||| ||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||      
T  25936098 agaaaagtctcaaggctag-tgtgagattgttaataggttcattttacactaaacaatctcacaaaatccattactcacaacaatccattaaaattcgat 25936000  T
Q  168 gagttttgaataccagtagacaatttttaagttatgcaaaatctcaattgaatac 222  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  25935999 gagttttgaatactagtagacaatttttaagttatgcaaaatctcaattgaatac 25935945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 41 - 223
Target Start/End: Complemental strand, 26336407 - 26336225
Alignment:
Q  41 aaaatctcaaggctatgtgttgaagatagaaaagtctcaaggctaggtgtgagattgttagtaggtacattttacactaaacaatctcacaaaatctatt 140  Q
    |||||||||||||||||||| | ||| | |||||||||||||||||||||||||||||| |||| |||||||||||||||| | |||||||||||| |||    
T  26336407 aaaatctcaaggctatgtgtgggagacaaaaaagtctcaaggctaggtgtgagattgttggtagatacattttacactaaaaagtctcacaaaatccatt 26336308  T
Q  141 actcacaacaatccattaaaatccgtagagttttgaataccagtagacaatttttaagttatgcaaaatctcaattgaatacc 223  Q
    |||||||| ||||||||||||||| |||| |||||||||||| || |||||||||||||| || |||||||||||||||||||    
T  26336307 actcacaataatccattaaaatccttagaattttgaataccaataaacaatttttaagttgtgtaaaatctcaattgaatacc 26336225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 47 - 223
Target Start/End: Complemental strand, 47685477 - 47685301
Alignment:
Q  47 tcaaggctatgtgttgaagatagaaaagtctcaaggctaggtgtgagattgttagtaggtacattttacactaaacaatctcacaaaatctattactcac 146  Q
    |||||||||||||| | ||| | ||||||||||||  |||||||||||||||||||||||||||||||||||||| | |||| |||||||||||||||||    
T  47685477 tcaaggctatgtgtgggagacaaaaaagtctcaagtttaggtgtgagattgttagtaggtacattttacactaaaaagtctcgcaaaatctattactcac 47685378  T
Q  147 aacaatccattaaaatccgtagagttttgaataccagtagacaatttttaagttatgcaaaatctcaattgaatacc 223  Q
    |||||||||||||||||| || | |||||||||||| |||||||||||||||||  |||||||||||||||||||||    
T  47685377 aacaatccattaaaatccttacaattttgaataccaatagacaatttttaagttgagcaaaatctcaattgaatacc 47685301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 45 - 223
Target Start/End: Complemental strand, 45333001 - 45332823
Alignment:
Q  45 tctcaaggctatgtgttgaagatagaaaagtctcaaggctaggtgtgagattgttagtaggtacattttacactaaacaatctcacaaaatctattactc 144  Q
    |||||||||||||||| | ||| | |||||||||||||||||||||||||||||| |||| |||||||||||||||| | | ||| |||||| |||||||    
T  45333001 tctcaaggctatgtgtgggagacaaaaaagtctcaaggctaggtgtgagattgttggtagatacattttacactaaaaagtttcataaaatccattactc 45332902  T
Q  145 acaacaatccattaaaatccgtagagttttgaataccagtagacaatttttaagttatgcaaaatctcaattgaatacc 223  Q
    |||||||||||||||||||| |||| |||||||||||| ||||||||||||||||| || |||||||||||||||||||    
T  45332901 acaacaatccattaaaatccttagaattttgaataccaatagacaatttttaagttgtgtaaaatctcaattgaatacc 45332823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 45 - 223
Target Start/End: Complemental strand, 45340691 - 45340513
Alignment:
Q  45 tctcaaggctatgtgttgaagatagaaaagtctcaaggctaggtgtgagattgttagtaggtacattttacactaaacaatctcacaaaatctattactc 144  Q
    |||||||||||||||| | ||| | |||||||||||||||||||||||||||||| |||| |||||||||||||||| | | ||| |||||| |||||||    
T  45340691 tctcaaggctatgtgtgggagacaaaaaagtctcaaggctaggtgtgagattgttggtagatacattttacactaaaaagtttcataaaatccattactc 45340592  T
Q  145 acaacaatccattaaaatccgtagagttttgaataccagtagacaatttttaagttatgcaaaatctcaattgaatacc 223  Q
    |||||||||||||||||||| |||| |||||||||||| ||||||||||||||||| || |||||||||||||||||||    
T  45340591 acaacaatccattaaaatccttagaattttgaataccaatagacaatttttaagttgtgtaaaatctcaattgaatacc 45340513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 45 - 223
Target Start/End: Complemental strand, 42721055 - 42720876
Alignment:
Q  45 tctcaaggctatgtgttgaagatagaaaa-gtctcaaggctaggtgtgagattgttagtaggtacattttacactaaacaatctcacaaaatctattact 143  Q
    |||||||||||||||| | ||| | |||| |||||||||||||||||||||||||| |||| |||||||||||||||| | |||||||||||| ||||||    
T  42721055 tctcaaggctatgtgtgggagacaaaaaaagtctcaaggctaggtgtgagattgttggtagatacattttacactaaaaagtctcacaaaatccattact 42720956  T
Q  144 cacaacaatccattaaaatccgtagagttttgaataccagtagacaatttttaagttatgcaaaatctcaattgaatacc 223  Q
    |||||||| |||||||||||| |||| |||||||||||| ||||||||||||||||| || |||||||||||||||||||    
T  42720955 cacaacaacccattaaaatccttagaattttgaataccaatagacaatttttaagttgtgtaaaatctcaattgaatacc 42720876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 80 - 223
Target Start/End: Original strand, 33449963 - 33450106
Alignment:
Q  80 aggctaggtgtgagattgttagtaggtacattttacactaaacaatctcacaaaatctattactcacaacaatccattaaaatccgtagagttttgaata 179  Q
    |||||| |||||||||||||||||| ||||||||||||||||   |||||||||||| ||||||||||| |||||||||||||||||||| |||||||||    
T  33449963 aggctatgtgtgagattgttagtagatacattttacactaaaatgtctcacaaaatccattactcacaataatccattaaaatccgtagaattttgaata 33450062  T
Q  180 ccagtagacaatttttaagttatgcaaaatctcaattgaatacc 223  Q
    ||| ||||||||||||||||| ||||||||||||||||||||||    
T  33450063 ccaatagacaatttttaagttgtgcaaaatctcaattgaatacc 33450106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 42 - 223
Target Start/End: Complemental strand, 54510050 - 54509871
Alignment:
Q  42 aaatctcaaggctatgtgttgaagatagaaaa-gtctcaaggctaggtgtgagattgttagtaggtacattttacactaaacaatctcacaaaatctatt 140  Q
    ||||||||| ||||||||| | ||| | |||| | ||||||| |||||||||||||||||||||||||||||||||||||| | |||||||||||| |||    
T  54510050 aaatctcaaagctatgtgtgggagacaaaaaaagcctcaaggttaggtgtgagattgttagtaggtacattttacactaaaaagtctcacaaaatccatt 54509951  T
Q  141 actcacaacaatccattaaaatccgtagagttttgaataccagtagacaatttttaagttatgcaaaatctcaattgaatacc 223  Q
       || |||||||||||||||||| || | |||||||||||| ||||||||||||||||| ||||||||||||||||||||||    
T  54509950 ---cataacaatccattaaaatccttacaattttgaataccaatagacaatttttaagttgtgcaaaatctcaattgaatacc 54509871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 22 - 203
Target Start/End: Complemental strand, 7820405 - 7820239
Alignment:
Q  22 gaatttggaagagtattacaaaatctcaagg-ctatgtgttgaagatagaaaagtctcaaggctaggtgtgagattgttagtaggtacattttacactaa 120  Q
    ||||||||||||||| ||||||||| ||||| |||||||| | ||| ||||||||||| ||||||||||||||||||||||||||| |||||||||||||    
T  7820405 gaatttggaagagtaatacaaaatcccaagggctatgtgtgggagacagaaaagtctccaggctaggtgtgagattgttagtaggtgcattttacactaa 7820306  T
Q  121 acaatctcacaaaatctattactcacaacaatccattaaaatccgtagagttttgaataccagtagacaatttttaagttatg 203  Q
    ||||||||| |||                ||| ||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  7820305 acaatctcataaa----------------aattcattaaaatccgtagagttttgaatactagtagacaatttttaagttatg 7820239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 42 - 223
Target Start/End: Complemental strand, 40144098 - 40143933
Alignment:
Q  42 aaatctcaaggctatgtgttgaagatagaaaagtctcaaggctaggtgtgagattgttagtaggtacattttacactaaacaatctcacaaaatctatta 141  Q
    ||||||||||||||||||| | ||| | ||||||||||||| || ||||||||||||||||||||||||||||||||||| | |                    
T  40144098 aaatctcaaggctatgtgtgggagacaaaaaagtctcaaggttaagtgtgagattgttagtaggtacattttacactaaaaagt---------------- 40144015  T
Q  142 ctcacaacaatccattaaaatccgtagagttttgaataccagtagacaatttttaagttatgcaaaatctcaattgaatacc 223  Q
    ||||||||||||||||||||| | || | |||||||||||| ||||||||||||||||| ||||||||||||||||||||||    
T  40144014 ctcacaacaatccattaaaattcttacaattttgaataccaatagacaatttttaagttgtgcaaaatctcaattgaatacc 40143933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 116 - 223
Target Start/End: Complemental strand, 38231036 - 38230929
Alignment:
Q  116 actaaacaatctcacaaaatctattactcacaacaatccattaaaatccgtagagttttgaataccagtagacaatttttaagttatgcaaaatctcaat 215  Q
    |||||| | |||||||||||| ||| |   ||| ||||||| ||||||  |||| |||||||||||| | |||||||  ||||| |||  ||||||||||    
T  38231036 actaaaaagtctcacaaaatccattccatccaagaatccatcaaaatctatagacttttgaataccaatggacaattcataagtcatgagaaatctcaat 38230937  T
Q  216 tgaatacc 223  Q
    ||||||||    
T  38230936 tgaatacc 38230929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 51
Target Start/End: Complemental strand, 56397770 - 56397742
Alignment:
Q  23 aatttggaagagtattacaaaatctcaag 51  Q
    |||||||||||||||||||||||||||||    
T  56397770 aatttggaagagtattacaaaatctcaag 56397742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 187; Significance: 1e-101; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 21 - 223
Target Start/End: Complemental strand, 29941304 - 29941102
Alignment:
Q  21 tgaatttggaagagtattacaaaatctcaaggctatgtgttgaagatagaaaagtctcaaggctaggtgtgagattgttagtaggtacattttacactaa 120  Q
    |||||||||||||||||||||||||||||||||||| ||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29941304 tgaatttggaagagtattacaaaatctcaaggctatatgtgggagatagaaaagtctcaaggctaggtgtgagattgttagtaggtacattttacactaa 29941205  T
Q  121 acaatctcacaaaatctattactcacaacaatccattaaaatccgtagagttttgaataccagtagacaatttttaagttatgcaaaatctcaattgaat 220  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29941204 acaatctcacaaaatccattactcacaacaatccattaaaatccgtagagttttgaataccagtagacaatttttaagttatgcaaaatctcaattgaat 29941105  T
Q  221 acc 223  Q
    |||    
T  29941104 acc 29941102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 171; E-Value: 5e-92
Query Start/End: Original strand, 21 - 223
Target Start/End: Complemental strand, 45547290 - 45547088
Alignment:
Q  21 tgaatttggaagagtattacaaaatctcaaggctatgtgttgaagatagaaaagtctcaaggctaggtgtgagattgttagtaggtacattttacactaa 120  Q
    |||||||||||| ||||||||||||||||||||||||||| | ||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  45547290 tgaatttggaagtgtattacaaaatctcaaggctatgtgtgggagatataaaagtctcaaggttaggtgtgagattgttagtaggtacattttacactaa 45547191  T
Q  121 acaatctcacaaaatctattactcacaacaatccattaaaatccgtagagttttgaataccagtagacaatttttaagttatgcaaaatctcaattgaat 220  Q
    |||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  45547190 acaatctcacaaaatccattacttacaacaatccattaaaatccgtagagttttgaataccagtagacaatttttaagttatgctaaatctcaattgaat 45547091  T
Q  221 acc 223  Q
    |||    
T  45547090 acc 45547088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 169; E-Value: 8e-91
Query Start/End: Original strand, 27 - 223
Target Start/End: Original strand, 6289232 - 6289428
Alignment:
Q  27 tggaagagtattacaaaatctcaaggctatgtgttgaagatagaaaagtctcaaggctaggtgtgagattgttagtaggtacattttacactaaacaatc 126  Q
    |||||||||||||||||||||||||||||||||| | ||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6289232 tggaagagtattacaaaatctcaaggctatgtgtgggagacaaaaaagtctcaaggctaggtgtgagattgttagtaggtacattttacactaaacaatc 6289331  T
Q  127 tcacaaaatctattactcacaacaatccattaaaatccgtagagttttgaataccagtagacaatttttaagttatgcaaaatctcaattgaatacc 223  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||    
T  6289332 tcacaaaatccattactcacaacaatccattaaaatccgtagagttttgaatactagcagacaatttttaagttatgcaaaatctcaattgaatacc 6289428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 42 - 220
Target Start/End: Complemental strand, 11535173 - 11534995
Alignment:
Q  42 aaatctcaaggctatgtgttgaagatagaaaagtctcaaggctaggtgtgagattgttagtaggtacattttacactaaacaatctcacaaaatctatta 141  Q
    ||||||||| ||||||||| | ||| | ||||||||||||| || ||||||||||||||||||||||||||||||||||| | |||||||||||| ||||    
T  11535173 aaatctcaaagctatgtgtgggagacaaaaaagtctcaaggttatgtgtgagattgttagtaggtacattttacactaaaaagtctcacaaaatccatta 11535074  T
Q  142 ctcacaacaatccattaaaatccgtagagttttgaataccagtagacaatttttaagttatgcaaaatctcaattgaat 220  Q
    ||||||||||||||||||||||| || | |||||||||||| ||||||||||||||||| |||||||||||||||||||    
T  11535073 ctcacaacaatccattaaaatccttacaattttgaataccaatagacaatttttaagttgtgcaaaatctcaattgaat 11534995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 42 - 223
Target Start/End: Original strand, 24193232 - 24193413
Alignment:
Q  42 aaatctcaaggctatgtgttgaagatagaaaagtctcaaggctaggtgtgagattgttagtaggtacattttacactaaacaatctcacaaaatctatta 141  Q
    |||| ||||| |||||||| | ||| | ||||||||||||| || ||||||||||||||||||||||||||||||||||| | |||||||||||| ||||    
T  24193232 aaatttcaagactatgtgtgggagacaaaaaagtctcaaggttaagtgtgagattgttagtaggtacattttacactaaaaagtctcacaaaatccatta 24193331  T
Q  142 ctcacaacaatccattaaaatccgtagagttttgaataccagtagacaatttttaagttatgcaaaatctcaattgaatacc 223  Q
    ||||||||||||||||||||||| || | |||||||||||| ||||||||||||||||| ||||||||||||||||||||||    
T  24193332 ctcacaacaatccattaaaatccttacaattttgaataccaatagacaatttttaagttgtgcaaaatctcaattgaatacc 24193413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 41 - 223
Target Start/End: Original strand, 34028677 - 34028859
Alignment:
Q  41 aaaatctcaaggctatgtgttgaagatagaaaagtctcaaggctaggtgtgagattgttagtaggtacattttacactaaacaatctcacaaaatctatt 140  Q
    ||||||||||| |||||||| | ||| | ||||||||||||||||||||||||||||||||||| | |||||||||||||| | |||||||||||| |||    
T  34028677 aaaatctcaagactatgtgtggcagacaaaaaagtctcaaggctaggtgtgagattgttagtagatgcattttacactaaaaagtctcacaaaatccatt 34028776  T
Q  141 actcacaacaatccattaaaatccgtagagttttgaataccagtagacaatttttaagttatgcaaaatctcaattgaatacc 223  Q
    ||||  |||||||||||||||||| || | |||||||||||| ||||||||||||||||| |||||||||| |||||||||||    
T  34028777 actcgtaacaatccattaaaatccttataattttgaataccaatagacaatttttaagttgtgcaaaatctgaattgaatacc 34028859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 41 - 223
Target Start/End: Original strand, 20157502 - 20157684
Alignment:
Q  41 aaaatctcaaggctatgtgttgaagatagaaaagtctcaaggctaggtgtgagattgttagtaggtacattttacactaaacaatctcacaaaatctatt 140  Q
    ||||||||||| |||||||| | ||| | ||||||||||| ||||||||||||||||||||||| | |||||||||||||| | |||||||||||| |||    
T  20157502 aaaatctcaagactatgtgtgggagacaaaaaagtctcaaagctaggtgtgagattgttagtagatgcattttacactaaaaagtctcacaaaatccatt 20157601  T
Q  141 actcacaacaatccattaaaatccgtagagttttgaataccagtagacaatttttaagttatgcaaaatctcaattgaatacc 223  Q
    ||||| ||||||| |||||||||| |||| |||||||||||| |||||||| |||||||| |||||||||| |||||||||||    
T  20157602 actcataacaatctattaaaatccttagaattttgaataccaatagacaatatttaagttgtgcaaaatctgaattgaatacc 20157684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 47 - 223
Target Start/End: Original strand, 11998169 - 11998344
Alignment:
Q  47 tcaaggctatgtgttgaagatagaaaagtctcaaggctaggtgtgagattgttagtaggtacattttacactaaacaatctcacaaaatctattactcac 146  Q
    |||||||||||||| | ||| | |||| |||||||||| |||||||||||||| |||| |||||||||||||||| | |||||||||||| |||||||||    
T  11998169 tcaaggctatgtgtgggagacaaaaaaatctcaaggct-ggtgtgagattgttggtagatacattttacactaaaaagtctcacaaaatccattactcac 11998267  T
Q  147 aacaatccattaaaatccgtagagttttgaataccagtagacaatttttaagttatgcaaaatctcaattgaatacc 223  Q
    ||||| |||||||||||| |||| |||||||||||| ||||||||||||||||| || |||||||||||||||||||    
T  11998268 aacaaaccattaaaatccttagaattttgaataccaatagacaatttttaagttgtgtaaaatctcaattgaatacc 11998344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 68 - 223
Target Start/End: Complemental strand, 24193868 - 24193706
Alignment:
Q  68 agaaaagtctcaaggctaggtgtgagattgttagtaggtacattttacactaaacaatctcacaaaatctattactcacaacaatccatt-------aaa 160  Q
    ||||||||||  |||||| ||||||||||||||||||||||||||||||||||| | |||||||||||| |||||||||| |||||||||       |||    
T  24193868 agaaaagtcttgaggctaagtgtgagattgttagtaggtacattttacactaaaaagtctcacaaaatccattactcacagcaatccattaaaaattaaa 24193769  T
Q  161 atccgtagagttttgaataccagtagacaatttttaagttatgcaaaatctcaattgaatacc 223  Q
    || |||||| |||||||||||| || ||| |||||||||| ||||||||||||||||||||||    
T  24193768 attcgtagaattttgaataccaataaacagtttttaagttgtgcaaaatctcaattgaatacc 24193706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 100 - 188
Target Start/End: Complemental strand, 45485631 - 45485543
Alignment:
Q  100 agtaggtacattttacactaaacaatctcacaaaatctattactcacaacaatccattaaaatccgtagagttttgaataccagtagac 188  Q
    |||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||| |||| |||||||||  |||||||    
T  45485631 agtaggtacattttacgctaaacaatctcacaaaatccattactcacaacaatccattaaaatccatagaattttgaatattagtagac 45485543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 150 - 223
Target Start/End: Original strand, 18176323 - 18176396
Alignment:
Q  150 aatccattaaaatccgtagagttttgaataccagtagacaatttttaagttatgcaaaatctcaattgaatacc 223  Q
    ||||||||||||||   ||| |||||||||||| |||||| ||| |||| | |  |||||||||||||||||||    
T  18176323 aatccattaaaatctcaagaattttgaataccaatagacattttataagatttataaaatctcaattgaatacc 18176396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 186; Significance: 1e-101; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 22 - 223
Target Start/End: Original strand, 24150558 - 24150759
Alignment:
Q  22 gaatttggaagagtattacaaaatctcaaggctatgtgttgaagatagaaaagtctcaaggctaggtgtgagattgttagtaggtacattttacactaaa 121  Q
    ||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24150558 gaatttggaagagtattacaaaatctcaaggctatgtgtgggagatagaaaagtctcaaggctaggtgtgagattgttagtaggtacattttacactaaa 24150657  T
Q  122 caatctcacaaaatctattactcacaacaatccattaaaatccgtagagttttgaataccagtagacaatttttaagttatgcaaaatctcaattgaata 221  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  24150658 caatctcacaaaatccattactcacaacaatccattaaaatccgtagagttttgaataccagtggacaatttttaagttatgcaaaatctcaattgaata 24150757  T
Q  222 cc 223  Q
    ||    
T  24150758 cc 24150759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 24 - 223
Target Start/End: Original strand, 38629528 - 38629727
Alignment:
Q  24 atttggaagagtattacaaaatctcaaggctatgtgttgaagatagaaaagtctcaaggctaggtgtgagattgttagtaggtacattttacactaaaca 123  Q
    ||||||||||||||||||||||||||||||||||||| | |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  38629528 atttggaagagtattacaaaatctcaaggctatgtgtgggagatagaaaaatctcaaggctaggtgtgagattgttagtaggtacattttacactaaaca 38629627  T
Q  124 atctcacaaaatctattactcacaacaatccattaaaatccgtagagttttgaataccagtagacaatttttaagttatgcaaaatctcaattgaatacc 223  Q
    ||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38629628 atctcacaaaatccattactcacaacaatccattaaaatccgtatagttttgaataccagtagacaatttttaagttatgcaaaatctcaattgaatacc 38629727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 23 - 223
Target Start/End: Complemental strand, 35731289 - 35731089
Alignment:
Q  23 aatttggaagagtattacaaaatctcaaggctatgtgttgaagatagaaaagtctcaaggctaggtgtgagattgttagtaggtacattttacactaaac 122  Q
    |||||||||||||||||||||||||||||||||||||| | ||||||||||||||||| |||||||||||||||||||| |||| |||||||||||||||    
T  35731289 aatttggaagagtattacaaaatctcaaggctatgtgtgggagatagaaaagtctcaatgctaggtgtgagattgttagcaggtgcattttacactaaac 35731190  T
Q  123 aatctcacaaaatctattactcacaacaatccattaaaatccgtagagttttgaataccagtagacaatttttaagttatgcaaaatctcaattgaatac 222  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35731189 aatctcacaaaatccattactcacaacaatccattaaaatccgtagagttttgaataccagtagacaatttttaagttatgcaaaatctcaattgaatac 35731090  T
Q  223 c 223  Q
    |    
T  35731089 c 35731089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 173; E-Value: 3e-93
Query Start/End: Original strand, 21 - 209
Target Start/End: Original strand, 26005580 - 26005768
Alignment:
Q  21 tgaatttggaagagtattacaaaatctcaaggctatgtgttgaagatagaaaagtctcaaggctaggtgtgagattgttagtaggtacattttacactaa 120  Q
    |||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26005580 tgaatttggaagagtattacaaaatctcaaggctatgtgtgggagatagaaaagtctcaaggctaggtgtgagattgttagtaggtacattttacactaa 26005679  T
Q  121 acaatctcacaaaatctattactcacaacaatccattaaaatccgtagagttttgaataccagtagacaatttttaagttatgcaaaat 209  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  26005680 acaatctcacaaaatccattactcacaacaatccattaaaatccgtagagttttgaataccaatagacaatttttaagttatgcaaaat 26005768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 164; E-Value: 8e-88
Query Start/End: Original strand, 21 - 223
Target Start/End: Complemental strand, 30589199 - 30588996
Alignment:
Q  21 tgaatttggaagagtattacaaaatctcaaggctatgtgttgaagatagaaaa-gtctcaaggctaggtgtgagattgttagtaggtacattttacacta 119  Q
    ||||||||||||||||||||||||||| |||||||||||| |  |||| |||| ||||||||| ||||||||||||||||||||||||||||||||||||    
T  30589199 tgaatttggaagagtattacaaaatctgaaggctatgtgtgggtgataaaaaaagtctcaaggttaggtgtgagattgttagtaggtacattttacacta 30589100  T
Q  120 aacaatctcacaaaatctattactcacaacaatccattaaaatccgtagagttttgaataccagtagacaatttttaagttatgcaaaatctcaattgaa 219  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  30589099 aacaatctcacaaaatccattactcacaacaatccattaaaatccgtagagttttgaataccagtagacaatttttaagttatgctaaatctcaattgaa 30589000  T
Q  220 tacc 223  Q
    ||||    
T  30588999 tacc 30588996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 22 - 223
Target Start/End: Original strand, 50900173 - 50900374
Alignment:
Q  22 gaatttggaagagtattacaaaatctcaaggctatgtgttgaagatagaaaagtctcaaggctaggtgtgagattgttagtaggtacattttacactaaa 121  Q
    |||||||||||||||||||||||||||||||  |||||| | |||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||    
T  50900173 gaatttggaagagtattacaaaatctcaaggaaatgtgtgggagatagaaaagtctcaaggctaggtgtgagattgttagtatgtacattttacattaaa 50900272  T
Q  122 caatctcacaaaatctattactcacaacaatccattaaaatccgtagagttttgaataccagtagacaatttttaagttatgcaaaatctcaattgaata 221  Q
    ||||||||||||||| ||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  50900273 caatctcacaaaatccattactcacaacaatccattaaaatctctagagttttgaataccagtagacaatttttaagttatgcaaaatctcaatcgaata 50900372  T
Q  222 cc 223  Q
    ||    
T  50900373 cc 50900374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 21 - 223
Target Start/End: Original strand, 36054732 - 36054934
Alignment:
Q  21 tgaatttggaagagtattacaaaatctcaaggctatgtgttgaagatagaaaagtctcaaggctaggtgtgagattgttagtaggtacattttacactaa 120  Q
    |||||||||||||||||||||||||||||||||||||||| | ||| | ||||||||||||| ||||||||||||||||| ||| |||||||||||||||    
T  36054732 tgaatttggaagagtattacaaaatctcaaggctatgtgtgggagacaaaaaagtctcaaggttaggtgtgagattgttaatagatacattttacactaa 36054831  T
Q  121 acaatctcacaaaatctattactcacaacaatccattaaaatccgtagagttttgaataccagtagacaatttttaagttatgcaaaatctcaattgaat 220  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||| || || ||||||||||||||||||||||||||||||||||||    
T  36054832 acaatctcacaaaatccattactcacaacaatccattaaaatccgtagagttttgaaaactagcagacaatttttaagttatgcaaaatctcaattgaat 36054931  T
Q  221 acc 223  Q
    |||    
T  36054932 acc 36054934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 22 - 221
Target Start/End: Original strand, 26293293 - 26293492
Alignment:
Q  22 gaatttggaagagtattacaaaatctcaaggctatgtgttgaagatagaaaagtctcaaggctaggtgtgagattgttagtaggtacattttacactaaa 121  Q
    ||||||||||||||||||||||||||||||||||||||| | ||| ||||||||||||||  |||||||||| |||||||||||||||||||||||||||    
T  26293293 gaatttggaagagtattacaaaatctcaaggctatgtgtgggagacagaaaagtctcaagattaggtgtgaggttgttagtaggtacattttacactaaa 26293392  T
Q  122 caatctcacaaaatctattactcacaacaatccattaaaatccgtagagttttgaataccagtagacaatttttaagttatgcaaaatctcaattgaata 221  Q
    ||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||| ||||    
T  26293393 caatcacacaaaatccattactcacaacaatccattaaaatccgtagagttttgaatactagtaaacaatttttaagttatgcaaaatctcaattaaata 26293492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 41 - 223
Target Start/End: Original strand, 46251948 - 46252130
Alignment:
Q  41 aaaatctcaaggctatgtgttgaagatagaaaagtctcaaggctaggtgtgagattgttagtaggtacattttacactaaacaatctcacaaaatctatt 140  Q
    |||||||| ||  ||||||| | ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  46251948 aaaatctcgagcttatgtgtgggagacagaaaagtctcaaggctaggtgtgagattgttagtaggtacattttacactaaacaatctcacaaaatccatt 46252047  T
Q  141 actcacaacaatccattaaaatccgtagagttttgaataccagtagacaatttttaagttatgcaaaatctcaattgaatacc 223  Q
    ||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  46252048 actcacaacaatccattaaaatccgtaaagttttgaataccagcagacaatttttaagttatgcaaaatctcaattgaatacc 46252130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 41 - 223
Target Start/End: Complemental strand, 13662887 - 13662705
Alignment:
Q  41 aaaatctcaaggctatgtgttgaagatagaaaagtctcaaggctaggtgtgagattgttagtaggtacattttacactaaacaatctcacaaaatctatt 140  Q
    |||||||||||| ||||||| | ||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  13662887 aaaatctcaaggttatgtgtgggaggcagaaaagtctcaaggctaggtgtgagattgttagtaggtacattttacactaaacaatctcacaaaatccatt 13662788  T
Q  141 actcacaacaatccattaaaatccgtagagttttgaataccagtagacaatttttaagttatgcaaaatctcaattgaatacc 223  Q
    ||||||||||||||||||||| |||||| ||||||||||| ||||||||||||||||||| ||| ||||||||||||||||||    
T  13662787 actcacaacaatccattaaaacccgtagtgttttgaatacgagtagacaatttttaagttgtgcgaaatctcaattgaatacc 13662705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 83 - 223
Target Start/End: Original strand, 26005770 - 26005910
Alignment:
Q  83 ctaggtgtgagattgttagtaggtacattttacactaaacaatctcacaaaatctattactcacaacaatccattaaaatccgtagagttttgaatacca 182  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||    
T  26005770 ctaggtgtgagattgttagtaggtacattttacactaaacaatctcacaaaatccattactcacaacaatccattaaaatccatagagttttgaatacca 26005869  T
Q  183 gtagacaatttttaagttatgcaaaatctcaattgaatacc 223  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  26005870 gtagacaatttttaagttatgcaaaatctcaattgaatacc 26005910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 122; E-Value: 9e-63
Query Start/End: Original strand, 23 - 223
Target Start/End: Original strand, 19551885 - 19552075
Alignment:
Q  23 aatttggaagagtattacaaaatctcaaggctatgtgttgaagatagaaaagtctcaaggctaggtgtgagattgttagtaggtacattttacactaaac 122  Q
    |||||||||||||||||||||||||||||||||| ||| | ||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  19551885 aatttggaagagtattacaaaatctcaaggctatatgtgggagaaagaaaagtctcaaggctaggtgtgagattgttattaggtacattttacactaaac 19551984  T
Q  123 aatctcacaaaatctattactcacaacaatccattaaaatccgtagagttttgaataccagtagacaatttttaagttatgcaaaatctcaattgaatac 222  Q
    ||| |||||||||          |||||||| ||||||||| |||||||||||||||||| |||||||||||||||||||||||||||| |||| |||||    
T  19551985 aatttcacaaaat----------caacaatcaattaaaatctgtagagttttgaataccactagacaatttttaagttatgcaaaatcttaattaaatac 19552074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 122; E-Value: 9e-63
Query Start/End: Original strand, 42 - 223
Target Start/End: Complemental strand, 27593490 - 27593309
Alignment:
Q  42 aaatctcaaggctatgtgttgaagatagaaaagtctcaaggctaggtgtgagattgttagtaggtacattttacactaaacaatctcacaaaatctatta 141  Q
    ||||||||| ||||||||||| ||| | ||||||||||||| |||||||||||||||||||||||||||||||||||||| | |||||||||||| ||||    
T  27593490 aaatctcaaagctatgtgttggagacaaaaaagtctcaaggttaggtgtgagattgttagtaggtacattttacactaaaaagtctcacaaaatccatta 27593391  T
Q  142 ctcacaacaatccattaaaatccgtagagttttgaataccagtagacaatttttaagttatgcaaaatctcaattgaatacc 223  Q
    ||||||||||||||||||||||| || | |||||||||||| ||||||||||||||| | ||||||| ||||||||||||||    
T  27593390 ctcacaacaatccattaaaatccttacaattttgaataccaatagacaatttttaagatgtgcaaaacctcaattgaatacc 27593309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 70 - 223
Target Start/End: Original strand, 39338073 - 39338224
Alignment:
Q  70 aaaagtctcaaggctaggtgtgagattgttagtaggtacattttacactaaacaatctcacaaaatctattactcacaacaatccattaaaatccgtaga 169  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||| | |||||  ||||| ||||||||||||||||||||||||||| || |    
T  39338073 aaaagtctcaaggttaggtgtgagattgttagtaggtacattttacactaaaaagtctca--aaatccattactcacaacaatccattaaaatccttaca 39338170  T
Q  170 gttttgaataccagtagacaatttttaagttatgcaaaatctcaattgaatacc 223  Q
     |||||||||||| ||||||||||||||||| ||||||||||||||||||||||    
T  39338171 attttgaataccaatagacaatttttaagttgtgcaaaatctcaattgaatacc 39338224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 41 - 223
Target Start/End: Complemental strand, 36786309 - 36786128
Alignment:
Q  41 aaaatctcaaggctatgtgttgaagatagaaaagtctcaaggctaggtgtgagattgttagtaggtacattttacactaaacaatctcacaaaatctatt 140  Q
    ||||||||||||||||||||   ||| | |||||||||||||| ||||||| ||||||||||||||||||||||||||||| | ||||| |||||| |||    
T  36786309 aaaatctcaaggctatgtgtgagagacaaaaaagtctcaaggc-aggtgtgtgattgttagtaggtacattttacactaaaaagtctcataaaatccatt 36786211  T
Q  141 actcacaacaatccattaaaatccgtagagttttgaataccagtagacaatttttaagttatgcaaaatctcaattgaatacc 223  Q
    |||||||||||| ||||||||||| || | |||||||||||| ||||||| ||| ||||| ||||||||||||||||||||||    
T  36786210 actcacaacaattcattaaaatccttacaattttgaataccaatagacaagtttaaagttttgcaaaatctcaattgaatacc 36786128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 54 - 223
Target Start/End: Complemental strand, 26556123 - 26555971
Alignment:
Q  54 tatgtgttgaagatagaaaagtctcaaggctaggtgtgagattgttagtaggtacattttacactaaacaatctcacaaaatctattactcacaacaatc 153  Q
    ||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                 ||||    
T  26556123 tatgtgtgggagatagaaaagtctcaaggctaggtgtgagattgttagtaggtacattttacactaaacaatctcacaa-----------------aatc 26556041  T
Q  154 cattaaaatccgtagagttttgaataccagtagacaatttttaagttatgcaaaatctcaattgaatacc 223  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  26556040 cattaaaatccgtagagttttgaatacccgtagacaatttttaagttatgcaaaatctcaattgaatacc 26555971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 80 - 221
Target Start/End: Complemental strand, 38682728 - 38682585
Alignment:
Q  80 aggctaggtgtgagattgttagtaggtac---attttacactaaacaatctcacaaaatctattactcacaacaatccattaaaatccgtagagttttga 176  Q
    |||||||||||||||||||||||||||||   |||||| |||||| |||||| ||||||| |||||||||||||||||||||||||||||||| ||||||    
T  38682728 aggctaggtgtgagattgttagtaggtactacattttatactaaaaaatctctcaaaatccattactcacaacaatccattaaaatccgtagaattttga 38682629  T
Q  177 ataccagtagacaatttttaagttatgcaaaatctcaattgaata 221  Q
    |||||| || |||||||||||||| ||||||||||||||||||||    
T  38682628 ataccaata-acaatttttaagttgtgcaaaatctcaattgaata 38682585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 84 - 223
Target Start/End: Original strand, 52023987 - 52024126
Alignment:
Q  84 taggtgtgagattgttagtaggtacattttacactaaacaatctcacaaaatctattactcacaacaatccattaaaatccgtagagttttgaataccag 183  Q
    ||||||||||||||||| ||||||||||||| |||||| | ||||  |||||| |||||||||||||||||||||||||||||||| |||||| ||| |     
T  52023987 taggtgtgagattgttactaggtacattttatactaaaaagtctcttaaaatccattactcacaacaatccattaaaatccgtagaattttgattactaa 52024086  T
Q  184 tagacaatttttaagttatgcaaaatctcaattgaatacc 223  Q
    |||||||||||||| || ||||||||||||||||||||||    
T  52024087 tagacaatttttaaattgtgcaaaatctcaattgaatacc 52024126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 195 - 223
Target Start/End: Original strand, 53183972 - 53184000
Alignment:
Q  195 taagttatgcaaaatctcaattgaatacc 223  Q
    |||||||||||||||||||||||||||||    
T  53183972 taagttatgcaaaatctcaattgaatacc 53184000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 183; Significance: 4e-99; HSPs: 23)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 21 - 223
Target Start/End: Complemental strand, 7148399 - 7148197
Alignment:
Q  21 tgaatttggaagagtattacaaaatctcaaggctatgtgttgaagatagaaaagtctcaaggctaggtgtgagattgttagtaggtacattttacactaa 120  Q
    |||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7148399 tgaatttggaagagtattacaaaatctcaaggctatgtgtgggagatagaaaagtctcaaggctaggtgtgagattgttagtaggtacattttacactaa 7148300  T
Q  121 acaatctcacaaaatctattactcacaacaatccattaaaatccgtagagttttgaataccagtagacaatttttaagttatgcaaaatctcaattgaat 220  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||    
T  7148299 acaatctcacaaaatccattactcacaacaatccattaaaatccgtagagttttgaatgccagtagacaatttctaagttatgcaaaatctcaattgaat 7148200  T
Q  221 acc 223  Q
    |||    
T  7148199 acc 7148197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 21 - 223
Target Start/End: Original strand, 41386595 - 41386797
Alignment:
Q  21 tgaatttggaagagtattacaaaatctcaaggctatgtgttgaagatagaaaagtctcaaggctaggtgtgagattgttagtaggtacattttacactaa 120  Q
    |||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41386595 tgaatttggaagagtattacaaaatctcaaggctatgtgtgggagatagaaaagtctcaaggctaggtgtgagattgttagtaggtacattttacactaa 41386694  T
Q  121 acaatctcacaaaatctattactcacaacaatccattaaaatccgtagagttttgaataccagtagacaatttttaagttatgcaaaatctcaattgaat 220  Q
    ||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  41386695 acaatctcataaaatccattactcacaacaatccattaaaatccgtagagttttgaatactagtagacaatttttaagttatgcaaaatctcaattgaat 41386794  T
Q  221 acc 223  Q
    |||    
T  41386795 acc 41386797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 179; E-Value: 9e-97
Query Start/End: Original strand, 21 - 223
Target Start/End: Original strand, 29260001 - 29260203
Alignment:
Q  21 tgaatttggaagagtattacaaaatctcaaggctatgtgttgaagatagaaaagtctcaaggctaggtgtgagattgttagtaggtacattttacactaa 120  Q
    ||||||||||| |||||||||||||||||||||||||||| | ||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||    
T  29260001 tgaatttggaatagtattacaaaatctcaaggctatgtgtgggagatagaaaagtctcaaggttaggtgtgagattgttagtacgtacattttacactaa 29260100  T
Q  121 acaatctcacaaaatctattactcacaacaatccattaaaatccgtagagttttgaataccagtagacaatttttaagttatgcaaaatctcaattgaat 220  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29260101 acaatctcacaaaatccattactcacaacaatccattaaaatccgtagagttttgaataccagtagacaatttttaagttatgcaaaatctcaattgaat 29260200  T
Q  221 acc 223  Q
    |||    
T  29260201 acc 29260203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 171; E-Value: 5e-92
Query Start/End: Original strand, 21 - 223
Target Start/End: Complemental strand, 2113150 - 2112948
Alignment:
Q  21 tgaatttggaagagtattacaaaatctcaaggctatgtgttgaagatagaaaagtctcaaggctaggtgtgagattgttagtaggtacattttacactaa 120  Q
    |||||||||||||||||||||||||||||||||||| ||| | ||| ||||||||||||| ||||||||||||||||| |||||||||||||||||||||    
T  2113150 tgaatttggaagagtattacaaaatctcaaggctatatgtgggagacagaaaagtctcaatgctaggtgtgagattgtcagtaggtacattttacactaa 2113051  T
Q  121 acaatctcacaaaatctattactcacaacaatccattaaaatccgtagagttttgaataccagtagacaatttttaagttatgcaaaatctcaattgaat 220  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  2113050 acaatctcacaaaatccattactcacaacaatccattaaaatccgtagagttttgaataccagtagacaatttttaagttatgcgaaatctcaattgaat 2112951  T
Q  221 acc 223  Q
    |||    
T  2112950 acc 2112948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 24 - 223
Target Start/End: Complemental strand, 4655403 - 4655204
Alignment:
Q  24 atttggaagagtattacaaaatctcaaggctatgtgttgaagatagaaaagtctcaaggctaggtgtgagattgttagtaggtacattttacactaaaca 123  Q
    |||||||||||||| ||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  4655403 atttggaagagtatcacaaaatctcaaggctatgtgtgagagatagaaaagtctcaaggctaggtgtgagattgttagtatgtacattttacactaaaca 4655304  T
Q  124 atctcacaaaatctattactcacaacaatccattaaaatccgtagagttttgaataccagtagacaatttttaagttatgcaaaatctcaattgaatacc 223  Q
    ||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  4655303 atctcacaaaatccattactcataacaatccattaaaatccgtagagttttgaataccggtagacaatttttaagttatgcaaaatctcaattgaatacc 4655204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 25 - 223
Target Start/End: Original strand, 40265010 - 40265208
Alignment:
Q  25 tttggaagagtattacaaaatctcaaggctatgtgttgaagatagaaaagtctcaaggctaggtgtgagattgttagtaggtacattttacactaaacaa 124  Q
    ||||| ||||||||||||||||| ||||||| |||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40265010 tttggtagagtattacaaaatctaaaggctacgtgtgggagatagaaaagtctcaaggctaggtgtgagattgttagtaggtacattttacactaaacaa 40265109  T
Q  125 tctcacaaaatctattactcacaacaatccattaaaatccgtagagttttgaataccagtagacaatttttaagttatgcaaaatctcaattgaatacc 223  Q
    |||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  40265110 tctcacaaaatccattactcacaacaatccattaaaatccatagagttttgaataccattagacaatttttaagttatgcaaaatctcaattgaatacc 40265208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 23 - 223
Target Start/End: Complemental strand, 42275330 - 42275129
Alignment:
Q  23 aatttggaagagtattacaaaatctcaaggctatgtgttgaagatagaaaagtctcaaggctaggtgtgagattg-ttagtaggtacattttacactaaa 121  Q
    |||||||||||||||||||||||||||||| ||||||| | ||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  42275330 aatttggaagagtattacaaaatctcaaggttatgtgtgggagacagaaaagtctcaaggctaggtgtgagattggttagtaggtacattttacactaaa 42275231  T
Q  122 caatctcacaaaatctattactcacaacaatccattaaaatccgtagagttttgaataccagtagacaatttttaagttatgcaaaatctcaattgaata 221  Q
    ||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  42275230 caatctcacaaaatccattactcacaacaatccataaaaatccgtagagttttgaatactagtagacaatttttaagttatgcaaaatctcaattgaata 42275131  T
Q  222 cc 223  Q
    ||    
T  42275130 cc 42275129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 22 - 223
Target Start/End: Original strand, 41965526 - 41965725
Alignment:
Q  22 gaatttggaagagtattacaaaatctcaaggctatgtgttgaagatagaaaagtctcaaggctaggtgtgagattgttagtaggtacattttacactaaa 121  Q
    ||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  41965526 gaatttggaagagtattacaaaatctcaaggctatgtgtgggagatagaaaagtctcaaggctaggtgcgagattgttagtaggtacattttacactaaa 41965625  T
Q  122 caatctcacaaaatctattactcacaacaatccattaaaatccgtagagttttgaataccagtagacaatttttaagttatgcaaaatctcaattgaata 221  Q
     |||||||||||||| |||||||||||||||||||||||||  ||||||||||||||||||||||||||  |||||||||||||||||||||||||||||    
T  41965626 taatctcacaaaatccattactcacaacaatccattaaaatatgtagagttttgaataccagtagacaa--tttaagttatgcaaaatctcaattgaata 41965723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 22 - 223
Target Start/End: Original strand, 43605090 - 43605291
Alignment:
Q  22 gaatttggaagagtattacaaaatctcaaggctatgtgttgaagatagaaaagtctcaaggctaggtgtgagattgttagtaggtacattttacactaaa 121  Q
    ||||||||||||||||||||||||||||||||||||||| | ||| | |||||||||||||||||||||||||||||||||| |||||||||||| ||||    
T  43605090 gaatttggaagagtattacaaaatctcaaggctatgtgtgggagacaaaaaagtctcaaggctaggtgtgagattgttagtaagtacattttacattaaa 43605189  T
Q  122 caatctcacaaaatctattactcacaacaatccattaaaatccgtagagttttgaataccagtagacaatttttaagttatgcaaaatctcaattgaata 221  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||| ||||||||||||||||    
T  43605190 caatctcacaaaatccattactcacaacaatccattaaaatccgtagagttttgaatactagcagacaatttttaagttatgcgaaatctcaattgaata 43605289  T
Q  222 cc 223  Q
    ||    
T  43605290 cc 43605291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 68 - 223
Target Start/End: Original strand, 10802543 - 10802698
Alignment:
Q  68 agaaaagtctcaaggctaggtgtgagattgttagtaggtacattttacactaaacaatctcacaaaatctattactcacaacaatccattaaaatccgta 167  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  10802543 agaaaagtctcaaggctaggtgtgagattgttagtaggtacattttacactaaacaatctcacaaaatccattactcacaacaatccattaaaatccgta 10802642  T
Q  168 gagttttgaataccagtagacaatttttaagttatgcaaaatctcaattgaatacc 223  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  10802643 gagttttgaatactagtagacaatttttaagttatgcaaaatctcaattgaatacc 10802698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 41 - 223
Target Start/End: Complemental strand, 28620183 - 28620001
Alignment:
Q  41 aaaatctcaaggctatgtgttgaagatagaaaagtctcaaggctaggtgtgagattgttagtaggtacattttacactaaacaatctcacaaaatctatt 140  Q
    |||||||||||| ||||||| | ||| ||||||||||||||  |||||||||||||||||||||||||||| |||| |||||||||||||||| |  |||    
T  28620183 aaaatctcaaggttatgtgtgggagacagaaaagtctcaagattaggtgtgagattgttagtaggtacattgtacattaaacaatctcacaaagttcatt 28620084  T
Q  141 actcacaacaatccattaaaatccgtagagttttgaataccagtagacaatttttaagttatgcaaaatctcaattgaatacc 223  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28620083 actcacaacaatccattaaaatccgtagagttttgaataccagtagacaatttttaagttatgcaaaatctcaattgaatacc 28620001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 75 - 223
Target Start/End: Complemental strand, 9457848 - 9457700
Alignment:
Q  75 tctcaaggctaggtgtgagattgttagtaggtacattttacactaaacaatctcacaaaatctattactcacaacaatccattaaaatccgtagagtttt 174  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||    
T  9457848 tctcaaggttaggtgtgagattgttagtaggtacattttacactaaacaatctcataaaatccattactcacaacaatccattaaaatccgtagagtttt 9457749  T
Q  175 gaataccagtagacaatttttaagttatgcaaaatctcaattgaatacc 223  Q
    |||||||  ||||||||||||||||||||||||||||||||||||||||    
T  9457748 gaataccgatagacaatttttaagttatgcaaaatctcaattgaatacc 9457700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 42 - 222
Target Start/End: Original strand, 37567118 - 37567298
Alignment:
Q  42 aaatctcaaggctatgtgttgaagatagaaaagtctcaaggctaggtgtgagattgttagtaggtacattttacactaaacaatctcacaaaatctatta 141  Q
    |||||| |||||||||||| | ||| | ||||||||||||| ||||||||||||||||||||| |||||||||||||||| |  ||||||||||| ||||    
T  37567118 aaatcttaaggctatgtgtgggagacaaaaaagtctcaaggttaggtgtgagattgttagtagatacattttacactaaaaagcctcacaaaatccatta 37567217  T
Q  142 ctcacaacaatccattaaaatccgtagagttttgaataccagtagacaatttttaagttatgcaaaatctcaattgaatac 222  Q
    ||||||||||| |||||||||||||| | |||||||||||| ||||||||||||||||| |||||||||||||||||||||    
T  37567218 ctcacaacaattcattaaaatccgtacaattttgaataccaatagacaatttttaagttgtgcaaaatctcaattgaatac 37567298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 41 - 223
Target Start/End: Original strand, 4302551 - 4302735
Alignment:
Q  41 aaaatctcaaggctatgtgttgaagatagaaaa--gtctcaaggctaggtgtgagattgttagtaggtacattttacactaaacaatctcacaaaatcta 138  Q
    |||||||||||||||||||| | ||| | ||||  |||||||||||||||||||||||||||||||||||||||||||||||| | |||| | ||||| |    
T  4302551 aaaatctcaaggctatgtgtgggagacaaaaaaatgtctcaaggctaggtgtgagattgttagtaggtacattttacactaaaaagtctcgctaaatcca 4302650  T
Q  139 ttactcacaacaatccattaaaatccgtagagttttgaataccagtagacaatttttaagttatgcaaaatctcaattgaatacc 223  Q
    |||||||||||||||||||||||||| || | |||||||||| | ||||||||||||||||| ||||||||||||||||||||||    
T  4302651 ttactcacaacaatccattaaaatccttacaattttgaatactaatagacaatttttaagttgtgcaaaatctcaattgaatacc 4302735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 42 - 223
Target Start/End: Original strand, 30382420 - 30382601
Alignment:
Q  42 aaatctcaaggctatgtgttgaagatagaaaagtctcaaggctaggtgtgagattgttagtaggtacattttacactaaacaatctcacaaaatctatta 141  Q
    ||||||||| | ||||||| | ||| | ||||||||||||| ||| |||||||||||||||||||||||||||||||||| | |||||||||||  ||||    
T  30382420 aaatctcaaagttatgtgtgggagacaaaaaagtctcaaggttagatgtgagattgttagtaggtacattttacactaaaaagtctcacaaaattgatta 30382519  T
Q  142 ctcacaacaatccattaaaatccgtagagttttgaataccagtagacaatttttaagttatgcaaaatctcaattgaatacc 223  Q
    ||||||||||||||||||||||| || | |||||||||||| ||||||||||||||||| ||||||||||||||||||||||    
T  30382520 ctcacaacaatccattaaaatccttacaattttgaataccaatagacaatttttaagttgtgcaaaatctcaattgaatacc 30382601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 69 - 223
Target Start/End: Complemental strand, 8502943 - 8502789
Alignment:
Q  69 gaaaagtctcaaggctaggtgtgagattgttagtaggtacattttacactaaacaatctcacaaaatctattactcacaacaatccattaaaatccgtag 168  Q
    ||||||||| ||||||| ||||||||||||||||||||||||||||||||||| | ||||| |||||| |||||||||||||||||||||||||||||||    
T  8502943 gaaaagtcttaaggctatgtgtgagattgttagtaggtacattttacactaaaaagtctcataaaatccattactcacaacaatccattaaaatccgtag 8502844  T
Q  169 agttttgaataccagtagacaatttttaagttatgcaaaatctcaattgaatacc 223  Q
    | |||| ||||||| ||||||||||||||||| |||||||||| |||||||||||    
T  8502843 aattttaaataccaatagacaatttttaagttgtgcaaaatcttaattgaatacc 8502789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 91 - 223
Target Start/End: Complemental strand, 9209325 - 9209193
Alignment:
Q  91 gagattgttagtaggtacattttacactaaacaatctcacaaaatctattactcacaacaatccattaaaatccgtagagttttgaataccagtagacaa 190  Q
    ||||||||||||||||||||||||||||||| | |||||||||||  ||||| |||||||| | |||||||||| ||||||||||||||||| |||||||    
T  9209325 gagattgttagtaggtacattttacactaaaaagtctcacaaaataaattacccacaacaaactattaaaatccttagagttttgaataccaatagacaa 9209226  T
Q  191 tttttaagttatgcaaaatctcaattgaatacc 223  Q
    |||||||||| | |||||| |||||||||||||    
T  9209225 tttttaagttgtccaaaatttcaattgaatacc 9209193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 69 - 222
Target Start/End: Complemental strand, 35142353 - 35142200
Alignment:
Q  69 gaaaagtctcaaggctaggtgtgagattgttagtaggtacattttacactaaacaatctcacaaaatctattactcacaacaatccattaaaatccgtag 168  Q
    |||||||||  ||||||| ||||||| |||||||||||| ||||||||||||| | ||||| |||||| |||||||||||||||| | |||||||||||     
T  35142353 gaaaagtcttgaggctagttgtgagagtgttagtaggtagattttacactaaaaagtctcataaaatccattactcacaacaatctaataaaatccgtaa 35142254  T
Q  169 agttttgaataccagtagacaatttttaagttatgcaaaatctcaattgaatac 222  Q
      |||||||||||| ||||||||||||||||| | |||||||| ||||||||||    
T  35142253 tattttgaataccaatagacaatttttaagttgtacaaaatcttaattgaatac 35142200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 22 - 102
Target Start/End: Original strand, 41965324 - 41965404
Alignment:
Q  22 gaatttggaagagtattacaaaatctcaaggctatgtgttgaagatagaaaagtctcaaggctaggtgtgagattgttagt 102  Q
    ||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||| ||||||||||||    
T  41965324 gaatttggaagagtattacaaaatctcaaggctatgtgtgggagatagaaaagtctcaaggctaggtgcgagattgttagt 41965404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 185 - 222
Target Start/End: Original strand, 1605902 - 1605939
Alignment:
Q  185 agacaatttttaagttatgcaaaatctcaattgaatac 222  Q
    ||||||||||||||||||||||||||||||||||||||    
T  1605902 agacaatttttaagttatgcaaaatctcaattgaatac 1605939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 68 - 121
Target Start/End: Original strand, 40013271 - 40013324
Alignment:
Q  68 agaaaagtctcaaggctaggtgtgagattgttagtaggtacattttacactaaa 121  Q
    |||||||||||||||| | ||||||||||||||||||||| |||||| ||||||    
T  40013271 agaaaagtctcaaggccaagtgtgagattgttagtaggtatattttatactaaa 40013324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 21 - 52
Target Start/End: Complemental strand, 9457872 - 9457841
Alignment:
Q  21 tgaatttggaagagtattacaaaatctcaagg 52  Q
    ||||||||||||||||||||||||||||||||    
T  9457872 tgaatttggaagagtattacaaaatctcaagg 9457841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 187 - 223
Target Start/End: Original strand, 40013363 - 40013399
Alignment:
Q  187 acaatttttaagttatgcaaaatctcaattgaatacc 223  Q
    |||||||||||||| |||||||||| |||||||||||    
T  40013363 acaatttttaagttgtgcaaaatctaaattgaatacc 40013399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 178; Significance: 4e-96; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 22 - 223
Target Start/End: Complemental strand, 45318818 - 45318617
Alignment:
Q  22 gaatttggaagagtattacaaaatctcaaggctatgtgttgaagatagaaaagtctcaaggctaggtgtgagattgttagtaggtacattttacactaaa 121  Q
    ||||||||||||||||||||||||||||||||||||||| |  |||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  45318818 gaatttggaagagtattacaaaatctcaaggctatgtgtgggtgataaaaaagtctcaaggttaggtgtgagattgttagtaggtacattttacactaaa 45318719  T
Q  122 caatctcacaaaatctattactcacaacaatccattaaaatccgtagagttttgaataccagtagacaatttttaagttatgcaaaatctcaattgaata 221  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45318718 caatctcacaaaatccattactcacaacaatccattaaaatccgtagagttttgaataccagtagacaatttttaagttatgcaaaatctcaattgaata 45318619  T
Q  222 cc 223  Q
    ||    
T  45318618 cc 45318617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 173; E-Value: 3e-93
Query Start/End: Original strand, 23 - 223
Target Start/End: Original strand, 26882553 - 26882753
Alignment:
Q  23 aatttggaagagtattacaaaatctcaaggctatgtgttgaagatagaaaagtctcaaggctaggtgtgagattgttagtaggtacattttacactaaac 122  Q
    |||||||||||||||||||||||||||||||||||||| |  |||||||||||||||||||||||||||||||||||||||  |||||||||||||||||    
T  26882553 aatttggaagagtattacaaaatctcaaggctatgtgtgggtgatagaaaagtctcaaggctaggtgtgagattgttagtatatacattttacactaaac 26882652  T
Q  123 aatctcacaaaatctattactcacaacaatccattaaaatccgtagagttttgaataccagtagacaatttttaagttatgcaaaatctcaattgaatac 222  Q
    |||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26882653 aatctcacaaaatccattactcacaacaatccattaaaatctgtagagttttgaataccagtagacaatttttaagttatgcaaaatctcaattgaatac 26882752  T
Q  223 c 223  Q
    |    
T  26882753 c 26882753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 171; E-Value: 5e-92
Query Start/End: Original strand, 21 - 223
Target Start/End: Complemental strand, 52705752 - 52705550
Alignment:
Q  21 tgaatttggaagagtattacaaaatctcaaggctatgtgttgaagatagaaaagtctcaaggctaggtgtgagattgttagtaggtacattttacactaa 120  Q
    |||||||||||||||||||||| ||||||||||||||||| | |||||||||||||| ||||||||| ||||||||||||||| ||||||||||||| ||    
T  52705752 tgaatttggaagagtattacaatatctcaaggctatgtgtgggagatagaaaagtcttaaggctaggcgtgagattgttagtaagtacattttacaccaa 52705653  T
Q  121 acaatctcacaaaatctattactcacaacaatccattaaaatccgtagagttttgaataccagtagacaatttttaagttatgcaaaatctcaattgaat 220  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52705652 acaatctcacaaaatccattactcacaacaatccattaaaatccgtagagttttgaataccagtagacaatttttaagttatgcaaaatctcaattgaat 52705553  T
Q  221 acc 223  Q
    |||    
T  52705552 acc 52705550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 42 - 223
Target Start/End: Complemental strand, 36402585 - 36402404
Alignment:
Q  42 aaatctcaaggctatgtgttgaagatagaaaagtctcaaggctaggtgtgagattgttagtaggtacattttacactaaacaatctcacaaaatctatta 141  Q
    ||||||||| | ||||||| | ||| | ||||||||||||| ||| |||||||||||||||||||||||||||||||||| | |||||||||||| ||||    
T  36402585 aaatctcaaagttatgtgtgggagacaaaaaagtctcaaggttagatgtgagattgttagtaggtacattttacactaaaaagtctcacaaaatccatta 36402486  T
Q  142 ctcacaacaatccattaaaatccgtagagttttgaataccagtagacaatttttaagttatgcaaaatctcaattgaatacc 223  Q
    ||||||||||||||||||||||| || | |||||||||||| ||||||||||||||||| ||||||||||||||||||||||    
T  36402485 ctcacaacaatccattaaaatccttacaattttgaataccaatagacaatttttaagttgtgcaaaatctcaattgaatacc 36402404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 41 - 223
Target Start/End: Original strand, 1928149 - 1928331
Alignment:
Q  41 aaaatctcaaggctatgtgttgaagatagaaaagtctcaaggctaggtgtgagattgttagtaggtacattttacactaaacaatctcacaaaatctatt 140  Q
    ||||||||||| |||||||| | ||| | ||||||| ||||||||||||||||||||||||||| | |||||||||||||| | |||||||||||| |||    
T  1928149 aaaatctcaagactatgtgtgggagacaaaaaagtcacaaggctaggtgtgagattgttagtagatgcattttacactaaaaagtctcacaaaatccatt 1928248  T
Q  141 actcacaacaatccattaaaatccgtagagttttgaataccagtagacaatttttaagttatgcaaaatctcaattgaatacc 223  Q
    ||||| |||||||||||||||||| |||| |||||||||||| ||||||||||||||||| |||||||||| |||||||||||    
T  1928249 actcataacaatccattaaaatccttagaattttgaataccaatagacaatttttaagttgtgcaaaatctgaattgaatacc 1928331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 45 - 223
Target Start/End: Complemental strand, 29209090 - 29208912
Alignment:
Q  45 tctcaaggctatgtgttgaagatagaaaagtctcaaggctaggtgtgagattgttagtaggtacattttacactaaacaatctcacaaaatctattactc 144  Q
    |||||||||||||||| | ||| | |||||||||||||||||||||||||||||| |||| || || |||||||||| | |||||||||||| |||||||    
T  29209090 tctcaaggctatgtgtgggagacaaaaaagtctcaaggctaggtgtgagattgttggtagatatatgttacactaaaaagtctcacaaaatccattactc 29208991  T
Q  145 acaacaatccattaaaatccgtagagttttgaataccagtagacaatttttaagttatgcaaaatctcaattgaatacc 223  Q
    |||||||||||||||||||| ||||  ||||||||||| ||||||||||||||||| || |||||||||||||||||||    
T  29208990 acaacaatccattaaaatccttagaactttgaataccaatagacaatttttaagttgtgtaaaatctcaattgaatacc 29208912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 42 - 223
Target Start/End: Original strand, 33243060 - 33243237
Alignment:
Q  42 aaatctcaaggctatgtgttgaagatagaaaagtctcaaggctaggtgtgagattgttagtaggtacattttacactaaacaatctcacaaaatctatta 141  Q
    ||||||||||||||||||| | ||| | |||||||||     |||||||||||||||||||||||||| |||||| |||| | | |||||||||| ||||    
T  33243060 aaatctcaaggctatgtgtgggagacaaaaaagtctct----taggtgtgagattgttagtaggtacaatttacattaaaaagtttcacaaaatccatta 33243155  T
Q  142 ctcacaacaatccattaaaatccgtagagttttgaataccagtagacaatttttaagttatgcaaaatctcaattgaatacc 223  Q
    ||||||||||||||||||||||| || | |||||||||||| ||||||||||||||||| | ||||||||||||||||||||    
T  33243156 ctcacaacaatccattaaaatccttacaattttgaataccaatagacaatttttaagttgtacaaaatctcaattgaatacc 33243237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 42 - 223
Target Start/End: Original strand, 33263233 - 33263410
Alignment:
Q  42 aaatctcaaggctatgtgttgaagatagaaaagtctcaaggctaggtgtgagattgttagtaggtacattttacactaaacaatctcacaaaatctatta 141  Q
    ||||||||||||||||||| | ||| | |||||||||     |||||||||||||||||||||||||| |||||| |||| | | |||||||||| ||||    
T  33263233 aaatctcaaggctatgtgtgggagacaaaaaagtctct----taggtgtgagattgttagtaggtacaatttacattaaaaagtttcacaaaatccatta 33263328  T
Q  142 ctcacaacaatccattaaaatccgtagagttttgaataccagtagacaatttttaagttatgcaaaatctcaattgaatacc 223  Q
    ||||||||||||||||||||||| || | |||||||||||| ||||||||||||||||| | ||||||||||||||||||||    
T  33263329 ctcacaacaatccattaaaatccttacaattttgaataccaatagacaatttttaagttgtacaaaatctcaattgaatacc 33263410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 42 - 223
Target Start/End: Complemental strand, 10897138 - 10896957
Alignment:
Q  42 aaatctcaaggctatgtgttgaagatagaaaagtctcaaggctaggtgtgagattgttagtaggtacattttacactaaacaatctcacaaaatctatta 141  Q
    ||||||||| |||||||||   ||| | |||||| |||||| ||||||||||||||||||||||||||||||||| ||||   | |||||||||| ||||    
T  10897138 aaatctcaaagctatgtgtgagagacaaaaaagtgtcaaggttaggtgtgagattgttagtaggtacattttacattaaaatgtttcacaaaatccatta 10897039  T
Q  142 ctcacaacaatccattaaaatccgtagagttttgaataccagtagacaatttttaagttatgcaaaatctcaattgaatacc 223  Q
    |||| ||||||||||||||||||    | |||||||||||| |||||||||||||||||  |||||||||||||||||||||    
T  10897038 ctcataacaatccattaaaatcctaccaattttgaataccaatagacaatttttaagttgggcaaaatctcaattgaatacc 10896957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 75 - 173
Target Start/End: Complemental strand, 45535089 - 45534991
Alignment:
Q  75 tctcaaggctaggtgtgagattgttagtaggtacattttacactaaacaatctcacaaaatctattactcacaacaatccattaaaatccgtagagttt 173  Q
    ||||||||||| |||||||||||||||||||||||||||||||| |||||||||| |||||| |||||||||||||||||||||||||| |||||||||    
T  45535089 tctcaaggctacgtgtgagattgttagtaggtacattttacactcaacaatctcaaaaaatccattactcacaacaatccattaaaatcagtagagttt 45534991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 79 - 164
Target Start/End: Complemental strand, 9831867 - 9831782
Alignment:
Q  79 aaggctaggtgtgagattgttagtaggtacattttacactaaacaatctcacaaaatctattactcacaacaatccattaaaatcc 164  Q
    |||| |||||||||||||||||||| ||| ||||||||||||| | |||||||||||| |||||||||||||||||||||||||||    
T  9831867 aaggttaggtgtgagattgttagtaagtatattttacactaaaaagtctcacaaaatccattactcacaacaatccattaaaatcc 9831782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 171 - 223
Target Start/End: Complemental strand, 9831499 - 9831447
Alignment:
Q  171 ttttgaataccagtagacaatttttaagttatgcaaaatctcaattgaatacc 223  Q
    |||||||||||| |||||||||| |||||| ||||||||||||||||||||||    
T  9831499 ttttgaataccaatagacaatttgtaagttgtgcaaaatctcaattgaatacc 9831447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 116 - 223
Target Start/End: Original strand, 19007400 - 19007507
Alignment:
Q  116 actaaacaatctcacaaaatctattactcacaacaatccattaaaatccgtagagttttgaataccagtagacaatttttaagttatgcaaaatctcaat 215  Q
    |||||| | |||||||||||| ||| |   ||| ||||||| ||||||  |||| |||| ||||||| |||||||||  ||||| |||  ||||||||||    
T  19007400 actaaaaagtctcacaaaatccattccatccaagaatccatcaaaatctatagactttttaataccaatagacaattcataagtcatgagaaatctcaat 19007499  T
Q  216 tgaatacc 223  Q
    ||||||||    
T  19007500 tgaatacc 19007507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 116 - 223
Target Start/End: Complemental strand, 48194854 - 48194747
Alignment:
Q  116 actaaacaatctcacaaaatctattactcacaacaatccattaaaatccgtagagttttgaataccagtagacaatttttaagttatgcaaaatctcaat 215  Q
    |||||| | |||||||||||| ||| |   ||| ||||||| ||||||  |||| |||||||||||| | |||||||  ||||| |||  ||||||||||    
T  48194854 actaaaaagtctcacaaaatccattccatccaagaatccatcaaaatctatagacttttgaataccaatggacaattcataagtcatgagaaatctcaat 48194755  T
Q  216 tgaatacc 223  Q
    ||||||||    
T  48194754 tgaatacc 48194747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 193 - 223
Target Start/End: Complemental strand, 45534993 - 45534963
Alignment:
Q  193 tttaagttatgcaaaatctcaattgaatacc 223  Q
    |||||||||||||||||||||||||||||||    
T  45534993 tttaagttatgcaaaatctcaattgaatacc 45534963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 175; Significance: 2e-94; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 21 - 223
Target Start/End: Original strand, 81507 - 81709
Alignment:
Q  21 tgaatttggaagagtattacaaaatctcaaggctatgtgttgaagatagaaaagtctcaaggctaggtgtgagattgttagtaggtacattttacactaa 120  Q
    ||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||    
T  81507 tgaatttggaagagtattacaaaatctcaaggctatgtgtgagagatagaaaagtctcaaggttaggtgtgagattgttagtagatacattttacactaa 81606  T
Q  121 acaatctcacaaaatctattactcacaacaatccattaaaatccgtagagttttgaataccagtagacaatttttaagttatgcaaaatctcaattgaat 220  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  81607 acaatctcacaaaatccattactcacaacaatccattaaaatccgtagagttttgaataccaggagacaatttttaagttatgcaaaatctcaattgaat 81706  T
Q  221 acc 223  Q
    |||    
T  81707 acc 81709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 175; Significance: 2e-94; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 21 - 223
Target Start/End: Original strand, 6476438 - 6476640
Alignment:
Q  21 tgaatttggaagagtattacaaaatctcaaggctatgtgttgaagatagaaaagtctcaaggctaggtgtgagattgttagtaggtacattttacactaa 120  Q
    |||||||| ||||||||||||||||||||||||||||||| | ||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  6476438 tgaatttgaaagagtattacaaaatctcaaggctatgtgtgggagacagaaaagtctcaaggctaggtgtgagattgttagtagttacattttacactaa 6476537  T
Q  121 acaatctcacaaaatctattactcacaacaatccattaaaatccgtagagttttgaataccagtagacaatttttaagttatgcaaaatctcaattgaat 220  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  6476538 acaatctcacaaaatccattactcacaacaatccattaaaatccgtagagttttgaatactagtagacaatttttaagttatgcaaaatctcaattgaat 6476637  T
Q  221 acc 223  Q
    |||    
T  6476638 acc 6476640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 75 - 223
Target Start/End: Original strand, 29834064 - 29834212
Alignment:
Q  75 tctcaaggctaggtgtgagattgttagtaggtacattttacactaaacaatctcacaaaatctattactcacaacaatccattaaaatccgtagagtttt 174  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||    
T  29834064 tctcaaggttaggtgtgagattgttagtaggtacattttacactaaacaatctcataaaatccattactcacaacaatccattaaaatccgtagagtttt 29834163  T
Q  175 gaataccagtagacaatttttaagttatgcaaaatctcaattgaatacc 223  Q
    |||||||  ||||||||||||||||||||||||||||||||||||||||    
T  29834164 gaataccgatagacaatttttaagttatgcaaaatctcaattgaatacc 29834212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 75 - 223
Target Start/End: Original strand, 29865498 - 29865646
Alignment:
Q  75 tctcaaggctaggtgtgagattgttagtaggtacattttacactaaacaatctcacaaaatctattactcacaacaatccattaaaatccgtagagtttt 174  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||    
T  29865498 tctcaaggttaggtgtgagattgttagtaggtacattttacactaaacaatctcataaaatccattactcacaacaatccattaaaatccgtagagtttt 29865597  T
Q  175 gaataccagtagacaatttttaagttatgcaaaatctcaattgaatacc 223  Q
    |||||||  ||||||||||||||||||||||||||||||||||||||||    
T  29865598 gaataccgatagacaatttttaagttatgcaaaatctcaattgaatacc 29865646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 49 - 221
Target Start/End: Original strand, 3110038 - 3110210
Alignment:
Q  49 aaggctatgtgttgaagatagaaaagtctcaaggctaggtgtgagattgttagtaggtacattttacactaaacaatctcacaaaatctattactcacaa 148  Q
    |||||||||||| | |||||||||||||| ||  ||||||| |||||||| |||| |||||||||||||||||||||||||||||||| |||||||||||    
T  3110038 aaggctatgtgtgggagatagaaaagtcttaatactaggtgcgagattgtcagtatgtacattttacactaaacaatctcacaaaatccattactcacaa 3110137  T
Q  149 caatccattaaaatccgtagagttttgaataccagtagacaatttttaagttatgcaaaatctcaattgaata 221  Q
    ||||||||||||||||||||||||||||||| | | | |||||||| |||||| |||||||||||||||||||    
T  3110138 caatccattaaaatccgtagagttttgaataactgcacacaattttcaagttaggcaaaatctcaattgaata 3110210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 41 - 223
Target Start/End: Complemental strand, 30878191 - 30878009
Alignment:
Q  41 aaaatctcaaggctatgtgttgaagatagaaaagtctcaaggctaggtgtgagattgttagtaggtacattttacactaaacaatctcacaaaatctatt 140  Q
    ||||||||||| |||||||| | ||| | ||||||||||||||||| ||||||||||||||||| | |||||||||||||| | |||||||||||| |||    
T  30878191 aaaatctcaagactatgtgtgggagacaaaaaagtctcaaggctagatgtgagattgttagtagatgcattttacactaaaaagtctcacaaaatccatt 30878092  T
Q  141 actcacaacaatccattaaaatccgtagagttttgaataccagtagacaatttttaagttatgcaaaatctcaattgaatacc 223  Q
    ||||| |||||||||||||||||| |||| |||||||||||| ||||||||||||||| | | |||||||| |||||||||||    
T  30878091 actcataacaatccattaaaatccttagaattttgaataccaatagacaatttttaagctgtacaaaatctgaattgaatacc 30878009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 42 - 223
Target Start/End: Original strand, 10643758 - 10643941
Alignment:
Q  42 aaatctcaaggctatgtgttgaagatagaaaagtctcaaggctaggtgtgagattgttagtaggtacattttacactaaacaatctcacaaaatctatta 141  Q
    |||||| |||||||||||| | ||| | |||||||| |||  |||||||||||||||||||||||||||||||||||||| | |||||||||||| ||||    
T  10643758 aaatcttaaggctatgtgtgggagacaaaaaagtcttaagattaggtgtgagattgttagtaggtacattttacactaaaaagtctcacaaaatccatta 10643857  T
Q  142 ctcacaacaatccattaaaatccgtagagttttgaataccagtagacaatttttaagttatg--caaaatctcaattgaatacc 223  Q
    ||||||||||||||||||||||| || | |||||| ||||| ||||||||||||||||| ||  ||||||||||||||||||||    
T  10643858 ctcacaacaatccattaaaatccttacaattttgattaccaatagacaatttttaagttgtgatcaaaatctcaattgaatacc 10643941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 125 - 223
Target Start/End: Original strand, 7858203 - 7858301
Alignment:
Q  125 tctcacaaaatctattactcacaacaatccattaaaatccgtagagttttgaataccagtagacaatttttaagttatgcaaaatctcaattgaatacc 223  Q
    |||||||||||||||||||||||||||| |||||||||||||||| ||||||||| || ||||||||||||||||| ||||||||||||||||||||||    
T  7858203 tctcacaaaatctattactcacaacaatgcattaaaatccgtagaattttgaatatcaatagacaatttttaagttgtgcaaaatctcaattgaatacc 7858301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 116 - 223
Target Start/End: Complemental strand, 709178 - 709071
Alignment:
Q  116 actaaacaatctcacaaaatctattactcacaacaatccattaaaatccgtagagttttgaataccagtagacaatttttaagttatgcaaaatctcaat 215  Q
    |||||| | |||||||||||| |||||   ||| ||||||| ||||||  |||| |||||||||||| |||||||||  ||||| |||  |||| |||||    
T  709178 actaaaaagtctcacaaaatccattacatccaagaatccatcaaaatctatagacttttgaataccaatagacaattcataagtcatgagaaatttcaat 709079  T
Q  216 tgaatacc 223  Q
    ||||||||    
T  709078 tgaatacc 709071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 116 - 223
Target Start/End: Complemental strand, 7100428 - 7100321
Alignment:
Q  116 actaaacaatctcacaaaatctattactcacaacaatccattaaaatccgtagagttttgaataccagtagacaatttttaagttatgcaaaatctcaat 215  Q
    |||||| | |||||||||||| ||| |   ||| ||||||| ||||||  |||| |||||||||||| | |||||||  ||||| |||  ||||||||||    
T  7100428 actaaaaagtctcacaaaatccattccatccaagaatccatcaaaatctatagacttttgaataccaatggacaattcataagtcatgagaaatctcaat 7100329  T
Q  216 tgaatacc 223  Q
    ||||||||    
T  7100328 tgaatacc 7100321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 116 - 223
Target Start/End: Original strand, 8794202 - 8794309
Alignment:
Q  116 actaaacaatctcacaaaatctattactcacaacaatccattaaaatccgtagagttttgaataccagtagacaatttttaagttatgcaaaatctcaat 215  Q
    |||||| | |||||||||||| ||| |   ||| ||||||| ||||||  |||| |||||||||||| | |||||||  ||||| |||  ||||||||||    
T  8794202 actaaaaagtctcacaaaatccattccatccaagaatccatcaaaatctatagacttttgaataccaatggacaattcataagtcatgagaaatctcaat 8794301  T
Q  216 tgaatacc 223  Q
    ||||||||    
T  8794302 tgaatacc 8794309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 52
Target Start/End: Original strand, 29834041 - 29834071
Alignment:
Q  22 gaatttggaagagtattacaaaatctcaagg 52  Q
    |||||||||||||||||||||||||||||||    
T  29834041 gaatttggaagagtattacaaaatctcaagg 29834071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 52
Target Start/End: Original strand, 29865475 - 29865505
Alignment:
Q  22 gaatttggaagagtattacaaaatctcaagg 52  Q
    |||||||||||||||||||||||||||||||    
T  29865475 gaatttggaagagtattacaaaatctcaagg 29865505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 155 - 223
Target Start/End: Complemental strand, 5957354 - 5957286
Alignment:
Q  155 attaaaatccgtagagttttgaataccagtagacaatttttaagttatgcaaaatctcaattgaatacc 223  Q
    |||||||||  |||| |||||||||||| |||||||||  ||||| |||  |||||| |||||||||||    
T  5957354 attaaaatctatagacttttgaataccaatagacaattcataagtcatgagaaatcttaattgaatacc 5957286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 174; Significance: 9e-94; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 22 - 223
Target Start/End: Complemental strand, 40410948 - 40410747
Alignment:
Q  22 gaatttggaagagtattacaaaatctcaaggctatgtgttgaagatagaaaagtctcaaggctaggtgtgagattgttagtaggtacattttacactaaa 121  Q
    |||||||||| ||||||||||||| |||||||||||||| | |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  40410948 gaatttggaaaagtattacaaaatttcaaggctatgtgtgggagatagaaaagtctcaagtctaggtgtgagattgttagtaggtacattttacactaaa 40410849  T
Q  122 caatctcacaaaatctattactcacaacaatccattaaaatccgtagagttttgaataccagtagacaatttttaagttatgcaaaatctcaattgaata 221  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  40410848 caatctcacaaaatccattactcacaacaatccattaaaatccgtagagttttgaatacgagtagacaatttttaagttatgcaaaatctcaattgaata 40410749  T
Q  222 cc 223  Q
    ||    
T  40410748 cc 40410747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 42 - 223
Target Start/End: Original strand, 6828537 - 6828719
Alignment:
Q  42 aaatctcaaggctatgtgttgaagatagaaaa-gtctcaaggctaggtgtgagattgttagtaggtacattttacactaaacaatctcacaaaatctatt 140  Q
    ||||||||| ||||||||| | ||| | |||| ||||||||| ||| |||||||||||||||||||||||||||||||||| | |||||||||||| |||    
T  6828537 aaatctcaaagctatgtgtgggagacaaaaaaagtctcaaggttagatgtgagattgttagtaggtacattttacactaaaaagtctcacaaaatccatt 6828636  T
Q  141 actcacaacaatccattaaaatccgtagagttttgaataccagtagacaatttttaagttatgcaaaatctcaattgaatacc 223  Q
    ||||| |||||||||||||||||| || | ||||||||| || ||||||||||||||||| ||||||||||||||||||||||    
T  6828637 actcataacaatccattaaaatccttacaattttgaatatcaatagacaatttttaagttgtgcaaaatctcaattgaatacc 6828719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 68 - 223
Target Start/End: Complemental strand, 17518741 - 17518586
Alignment:
Q  68 agaaaagtctcaaggctaggtgtgagattgttagtaggtacattttacactaaacaatctcacaaaatctattactcacaacaatccattaaaatccgta 167  Q
    ||||||||||  ||||| |||||||||||||||||||||||||||||||||||| | |||||||||||| ||||||| ||||| ||||||||||||||||    
T  17518741 agaaaagtcttgaggctgggtgtgagattgttagtaggtacattttacactaaaaagtctcacaaaatccattactcgcaacattccattaaaatccgta 17518642  T
Q  168 gagttttgaataccagtagacaatttttaagttatgcaaaatctcaattgaatacc 223  Q
    || |||||||| ||| || |||||||||||||| |||||||||| |||||||||||    
T  17518641 gaattttgaatcccaataaacaatttttaagttgtgcaaaatcttaattgaatacc 17518586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 68 - 223
Target Start/End: Complemental strand, 10571423 - 10571268
Alignment:
Q  68 agaaaagtctcaaggctaggtgtgagattgttagtaggtacattttacactaaacaatctcacaaaatctattactcacaacaatccattaaaatccgta 167  Q
    |||||||||| |||| |||||||||||||||||||| |||||||||| |||||| | | |||||||||| ||| || ||||||||| |||||| | | ||    
T  10571423 agaaaagtcttaaggttaggtgtgagattgttagtatgtacattttatactaaaaagtttcacaaaatccattcctgacaacaatctattaaatttcata 10571324  T
Q  168 gagttttgaataccagtagacaatttttaagttatgcaaaatctcaattgaatacc 223  Q
    || |||||||||||| ||||||||||||||||| | |||||||| |||||||||||    
T  10571323 gaattttgaataccaatagacaatttttaagttgtacaaaatcttaattgaatacc 10571268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 116 - 223
Target Start/End: Original strand, 2276025 - 2276132
Alignment:
Q  116 actaaacaatctcacaaaatctattactcacaacaatccattaaaatccgtagagttttgaataccagtagacaatttttaagttatgcaaaatctcaat 215  Q
    |||||| |||||||||||||| ||||  || || ||||||||||||||  |||| ||||||||| || |||||||||  ||||| |||  |||| | |||    
T  2276025 actaaaaaatctcacaaaatccattatacaaaagaatccattaaaatctatagacttttgaatatcaatagacaattcataagtcatgagaaattttaat 2276124  T
Q  216 tgaatacc 223  Q
    ||||||||    
T  2276125 tgaatacc 2276132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0153 (Bit Score: 171; Significance: 5e-92; HSPs: 1)
Name: scaffold0153
Description:

Target: scaffold0153; HSP #1
Raw Score: 171; E-Value: 5e-92
Query Start/End: Original strand, 21 - 223
Target Start/End: Original strand, 34539 - 34741
Alignment:
Q  21 tgaatttggaagagtattacaaaatctcaaggctatgtgttgaagatagaaaagtctcaaggctaggtgtgagattgttagtaggtacattttacactaa 120  Q
    ||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||    
T  34539 tgaatttggaagagtattacaaaatctcaaggctatgtgtgagagatagaaaagtctcaaggttaggtgtgagattgttagtagatacattttacactaa 34638  T
Q  121 acaatctcacaaaatctattactcacaacaatccattaaaatccgtagagttttgaataccagtagacaatttttaagttatgcaaaatctcaattgaat 220  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||    
T  34639 acaatctcacaaaatccattactcacaacaatccattaaaatccgtagagttttgaatatcagcagacaatttttaagttatgcaaaatctcaattgaat 34738  T
Q  221 acc 223  Q
    |||    
T  34739 acc 34741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0237 (Bit Score: 129; Significance: 6e-67; HSPs: 2)
Name: scaffold0237
Description:

Target: scaffold0237; HSP #1
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 75 - 223
Target Start/End: Original strand, 21192 - 21340
Alignment:
Q  75 tctcaaggctaggtgtgagattgttagtaggtacattttacactaaacaatctcacaaaatctattactcacaacaatccattaaaatccgtagagtttt 174  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||    
T  21192 tctcaaggttaggtgtgagattgttagtaggtacattttacactaaacaatctcataaaatccattactcacaacaatccattaaaatccgtagagtttt 21291  T
Q  175 gaataccagtagacaatttttaagttatgcaaaatctcaattgaatacc 223  Q
    |||||||  ||||||||||||||||||||||||||||||||||||||||    
T  21292 gaataccgatagacaatttttaagttatgcaaaatctcaattgaatacc 21340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0237; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 23 - 52
Target Start/End: Original strand, 21170 - 21199
Alignment:
Q  23 aatttggaagagtattacaaaatctcaagg 52  Q
    ||||||||||||||||||||||||||||||    
T  21170 aatttggaagagtattacaaaatctcaagg 21199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0202 (Bit Score: 67; Significance: 6e-30; HSPs: 1)
Name: scaffold0202
Description:

Target: scaffold0202; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 41 - 223
Target Start/End: Original strand, 16303 - 16469
Alignment:
Q  41 aaaatctcaaggctatgtgttgaagatagaaaagtctcaaggcta--ggtgtgagattgttagtaggtacattttacactaaacaatctcacaaaatcta 138  Q
    ||||| ||||||||||||||   ||| | ||||||||||||| ||  |||||||||||||||||||||||| |||||||||||||||||||||||||| |    
T  16303 aaaatttcaaggctatgtgtgagagacataaaagtctcaaggttataggtgtgagattgttagtaggtacactttacactaaacaatctcacaaaatcca 16402  T
Q  139 ttactcacaacaatccattaaaatccgtagagttttgaataccagtagacaatttttaagttatgcaaaatctcaattgaatacc 223  Q
    |||||||||                  |||| |||||||||| | ||||||||||||||||||||||||||||||||||||||||    
T  16403 ttactcaca------------------tagaattttgaatactaatagacaatttttaagttatgcaaaatctcaattgaatacc 16469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0472 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0472
Description:

Target: scaffold0472; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 200
Target Start/End: Original strand, 1705 - 1789
Alignment:
Q  116 actaaacaatctcacaaaatctattactcacaacaatccattaaaatccgtagagttttgaataccagtagacaatttttaagtt 200  Q
    |||||| | |||||||||||| |||   || || |||||||||||||| | ||| |||||||||||| |||||| ||| ||||||    
T  1705 actaaaaagtctcacaaaatccattctacaaaagaatccattaaaatctgcagatttttgaataccaatagacattttataagtt 1789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University