View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3036_low_2 (Length: 366)
Name: NF3036_low_2
Description: NF3036
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3036_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 105; Significance: 2e-52; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 65 - 184
Target Start/End: Original strand, 40833899 - 40834019
Alignment:
| Q |
65 |
tttttaatgtataacagtgacaatgaagtttaagcctaagaaagaccttaggccggctagatcaattctaacag-ttttaacatattcttagcttagcga |
163 |
Q |
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| T |
40833899 |
tttttaatgtataacagagacaatgaagtttaagcctaagaaagaccttaggccggctagatcaattctaacagcttttaacatattcttaccttagcga |
40833998 |
T |
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| Q |
164 |
gtaaaccaataaaacataaag |
184 |
Q |
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| T |
40833999 |
gtaaaccaataaaacataaag |
40834019 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 40833763 - 40833826
Alignment:
| Q |
1 |
aaagacccggttcatacatacttgctctgttccttcattcctccataaatgtccatttttaaga |
64 |
Q |
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| T |
40833763 |
aaagacccggttcatacatacttgctctgttccttcattcctccataaatgtccatttttaaga |
40833826 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 261 - 299
Target Start/End: Original strand, 40834112 - 40834150
Alignment:
| Q |
261 |
taaaagagaatatgcatgattatttcaaattcaaactct |
299 |
Q |
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| T |
40834112 |
taaaagagaatatgcatgattatttcaaattcaaactct |
40834150 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 180 - 243
Target Start/End: Original strand, 40834045 - 40834114
Alignment:
| Q |
180 |
taaagctgttatacaaaaacaa---agtaatttgcaaggaagtatgt---tggcctgtcatgacatttaa |
243 |
Q |
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| T |
40834045 |
taaagctgttatacaaaaacaaagtagtaatttgcaaggaagtatgtatgttgcctgtcatgacatttaa |
40834114 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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