View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3036_low_4 (Length: 292)
Name: NF3036_low_4
Description: NF3036
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3036_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 244; Significance: 1e-135; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 18 - 281
Target Start/End: Complemental strand, 31726171 - 31725908
Alignment:
| Q |
18 |
agccatcaaggcctttgaaatctcatatatgagcttaacctccaacgcatcactgacataatccttagaaacttgaggagcctttgaaatctgtttccca |
117 |
Q |
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| T |
31726171 |
agccatcaaagcctttgaaatctcatatatgagcttaacctccaacgcatcactggcataatccttagaaacttgaggagcctttggaatctgtttccca |
31726072 |
T |
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| Q |
118 |
ccaaagatgttatcagtgttcaaagattttaacataaagttcatataaccattcttaaaatttgtcaacattttcaatggtgatttaatcacccatctaa |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31726071 |
ccaaagatgttatcagtgttcaaagattttaacataaagttcatataacccttcttaaaatttgtcaacattttcaatggtgatttaatcacccatctaa |
31725972 |
T |
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| Q |
218 |
gccttgggattgttttgatcttccaaaacttacgtgggcttctttttaaccttatgatcttcat |
281 |
Q |
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| T |
31725971 |
gccttgggattgttttgatcctccaaaacttacgtgggcttctttttaaccttatgatcttcat |
31725908 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 148 - 260
Target Start/End: Original strand, 31711207 - 31711319
Alignment:
| Q |
148 |
aacataaagttcatataaccattcttaaaatttgtcaacattttcaatggtgatttaatcacccatctaagccttgggattgttttgatcttccaaaact |
247 |
Q |
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||||||||||||||||| |||||| | |||||||||| ||||||||||||| | |||| |||||| ||| ||||| ||||| ||||||||||| | |
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| T |
31711207 |
aacataaagttcatatacgtattcttgacttttgtcaacaatttcaatggtgatcttatcatccatcttagctttgggcttgttctgatcttccaatccc |
31711306 |
T |
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| Q |
248 |
tacgtgggcttct |
260 |
Q |
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| T |
31711307 |
tacgtggacttct |
31711319 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 148 - 260
Target Start/End: Original strand, 31719308 - 31719420
Alignment:
| Q |
148 |
aacataaagttcatataaccattcttaaaatttgtcaacattttcaatggtgatttaatcacccatctaagccttgggattgttttgatcttccaaaact |
247 |
Q |
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||||||||||||||||| |||||| | |||||||||| ||||||||||||| | |||| |||||| ||| ||||| ||||| ||||||||||| | |
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| T |
31719308 |
aacataaagttcatatacgtattcttgacttttgtcaacaatttcaatggtgatcttatcatccatcttagctttgggcttgttctgatcttccaatccc |
31719407 |
T |
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| Q |
248 |
tacgtgggcttct |
260 |
Q |
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| T |
31719408 |
tacgtggacttct |
31719420 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 148 - 260
Target Start/End: Original strand, 31721913 - 31722025
Alignment:
| Q |
148 |
aacataaagttcatataaccattcttaaaatttgtcaacattttcaatggtgatttaatcacccatctaagccttgggattgttttgatcttccaaaact |
247 |
Q |
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||||||||||||||||| |||||| | |||||||||| ||||||||||||| | |||| |||||| ||| ||||| ||||| ||||||||||| | |
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| T |
31721913 |
aacataaagttcatatacgtattcttgacttttgtcaacaatttcaatggtgatcttatcatccatcttagctttgggcttgttctgatcttccaatccc |
31722012 |
T |
|
| Q |
248 |
tacgtgggcttct |
260 |
Q |
| |
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||||||| ||||| |
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| T |
31722013 |
tacgtggacttct |
31722025 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 18 - 137
Target Start/End: Original strand, 31719157 - 31719276
Alignment:
| Q |
18 |
agccatcaaggcctttgaaatctcatatatgagcttaacctccaacgcatcactgacataatccttagaaacttgaggagcctttgaaatctgtttccca |
117 |
Q |
| |
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||||| ||||| ||| ||||||||| |||| ||| || |||| |||||||||| |||| | ||||| |||||| ||||||||| |||| ||||| | |
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| T |
31719157 |
agccaccaaggtcttagaaatctcaaatataagcctagcctcaaacgcatcaccagaataacctttagacacttgacgagcctttggaatccgtttcata |
31719256 |
T |
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| Q |
118 |
ccaaagatgttatcagtgtt |
137 |
Q |
| |
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||||| ||||||||||||| |
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| T |
31719257 |
ccaaacttgttatcagtgtt |
31719276 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 106; Significance: 4e-53; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 20 - 165
Target Start/End: Complemental strand, 46293908 - 46293763
Alignment:
| Q |
20 |
ccatcaaggcctttgaaatctcatatatgagcttaacctccaacgcatcactgacataatccttagaaacttgaggagcctttgaaatctgtttcccacc |
119 |
Q |
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||||||||||||||||||||||||||||||| ||||| || |||||||||||| ||||||||||||||||||||||| |||||| ||||||||||| | |
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| T |
46293908 |
ccatcaaggcctttgaaatctcatatatgagtttaacttcaaacgcatcactggcataatccttagaaacttgaggaacctttggaatctgtttccttac |
46293809 |
T |
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| Q |
120 |
aaagatgttatcagtgttcaaagattttaacataaagttcatataa |
165 |
Q |
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| T |
46293808 |
aaagatgttatcagcgttcaaagattttaacataaagttcatataa |
46293763 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 74; Significance: 6e-34; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 29 - 153
Target Start/End: Complemental strand, 48731822 - 48731697
Alignment:
| Q |
29 |
cctttgaaatctcatatatgagcttaacctccaacgcatcactgacataatccttagaaacttgag-gagcctttgaaatctgtttcccaccaaagatgt |
127 |
Q |
| |
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|||||||||||||||||| |||||||||||| ||| ||||||| |||||||||||||||||| | ||||||||| ||||||||||| |||||||||| |
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| T |
48731822 |
cctttgaaatctcatatacgagcttaacctcaaacacatcactagcataatccttagaaacttaaaagagcctttggaatctgtttccttccaaagatgt |
48731723 |
T |
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| Q |
128 |
tatcagtgttcaaagattttaacata |
153 |
Q |
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| T |
48731722 |
tgtcagtgttcaaagattttaacata |
48731697 |
T |
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