View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3036_low_9 (Length: 268)
Name: NF3036_low_9
Description: NF3036
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3036_low_9 |
 | |
|
| [»] scaffold0006 (5 HSPs) |
| | |
|
| [»] scaffold0069 (2 HSPs) |
| | |
|
| [»] scaffold0068 (1 HSPs) |
| | |
|
| [»] scaffold0012 (1 HSPs) |
| | |
|
| [»] scaffold0460 (2 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 166; Significance: 6e-89; HSPs: 12)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 34 - 251
Target Start/End: Complemental strand, 13596515 - 13596298
Alignment:
| Q |
34 |
aatagctctatatttggacattcatacaactttatctttttcaatgatttacattgaagagaatgaaccccaacaaagaatgccttaaatttggtcaagt |
133 |
Q |
| |
|
||||||||||| |||||||| | ||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
13596515 |
aatagctctattgttggacatgcgaacaacttgatcgttttcaatgatttacattgaagagaatgaaccccaacaaagaatgccttaagtttggtcaagt |
13596416 |
T |
|
| Q |
134 |
attcaagtttaatggaagtcaaatgaggaaacacaaatttaaccatctcatctgttccttcttccttgacaacaatttcatcaatcccacagttacttat |
233 |
Q |
| |
|
| | ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13596415 |
acttaaggttaatggaagtcaaatgaggaaacacaaatttaaccatctcatctgttccttcttccttgacaacaatttcatcaatcccacagttacttac |
13596316 |
T |
|
| Q |
234 |
tcgaagactttgaagttg |
251 |
Q |
| |
|
| |||||||||||||||| |
|
|
| T |
13596315 |
ttgaagactttgaagttg |
13596298 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 34 - 251
Target Start/End: Complemental strand, 13677676 - 13677459
Alignment:
| Q |
34 |
aatagctctatatttggacattcatacaactttatctttttcaatgatttacattgaagagaatgaaccccaacaaagaatgccttaaatttggtcaagt |
133 |
Q |
| |
|
||||||||||| ||||||||| | ||||||| || |||||||||||||||||||||||||||| ||||||||||||||||| |||| ||||||||| | |
|
|
| T |
13677676 |
aatagctctattcttggacatttaaacaacttgatggttttcaatgatttacattgaagagaatggaccccaacaaagaatgctttaagtttggtcaaat |
13677577 |
T |
|
| Q |
134 |
attcaagtttaatggaagtcaaatgaggaaacacaaatttaaccatctcatctgttccttcttccttgacaacaatttcatcaatcccacagttacttat |
233 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
13677576 |
tatcaagttcaatggaagtcaaatgaggaaacacaaatttaaccatctcatctggtccttcttccttgacaacaatttcttcaatcccacagttacttac |
13677477 |
T |
|
| Q |
234 |
tcgaagactttgaagttg |
251 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
13677476 |
aagaagactttgaagttg |
13677459 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 134; E-Value: 8e-70
Query Start/End: Original strand, 34 - 251
Target Start/End: Complemental strand, 13552780 - 13552563
Alignment:
| Q |
34 |
aatagctctatatttggacattcatacaactttatctttttcaatgatttacattgaagagaatgaaccccaacaaagaatgccttaaatttggtcaagt |
133 |
Q |
| |
|
||||||||||| ||||||||| | |||| || ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
13552780 |
aatagctctatttttggacatcgaaacaagttgatcgttttcaatgatttacattgaagagaatgaaccccaacaaagaatgccttaagtttggtcaagt |
13552681 |
T |
|
| Q |
134 |
attcaagtttaatggaagtcaaatgaggaaacacaaatttaaccatctcatctgttccttcttccttgacaacaatttcatcaatcccacagttacttat |
233 |
Q |
| |
|
| | ||| ||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||| | |||||||| | ||||||||| | ||||| |
|
|
| T |
13552680 |
acttaaggttaatggaagtcaaatgaggaaacacaaatttaaccatctcatatgtttcttcttccttggccacaatttcttgaatcccacactgacttac |
13552581 |
T |
|
| Q |
234 |
tcgaagactttgaagttg |
251 |
Q |
| |
|
| |||||||||||||||| |
|
|
| T |
13552580 |
ttgaagactttgaagttg |
13552563 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 34 - 251
Target Start/End: Original strand, 19189283 - 19189500
Alignment:
| Q |
34 |
aatagctctatatttggacattcatacaactttatctttttcaatgatttacattgaagagaatgaaccccaacaaagaatgccttaaatttggtcaagt |
133 |
Q |
| |
|
||||||||||| ||||||||||| |||| | ||| |||||||||||||||||||||||||||| |||||||||||||||||||||| ||| | ||| | |
|
|
| T |
19189283 |
aatagctctatttttggacattcgaacaaatcgatcgttttcaatgatttacattgaagagaatggaccccaacaaagaatgccttaagttttggcaaat |
19189382 |
T |
|
| Q |
134 |
attcaagtttaatggaagtcaaatgaggaaacacaaatttaaccatctcatctgttccttcttccttgacaacaatttcatcaatcccacagttacttat |
233 |
Q |
| |
|
||||||| ||||||| || || || ||||||| ||||||||||||||||||| ||||||||||||| |||||||||| | || ||||| ||||||| |
|
|
| T |
19189383 |
gttcaagtataatggatgttaactgtggaaacaataatttaaccatctcatctggtccttcttccttggcaacaatttcttggatgccacatttacttac |
19189482 |
T |
|
| Q |
234 |
tcgaagactttgaagttg |
251 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
19189483 |
tcgaagactttgaagttg |
19189500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 34 - 251
Target Start/End: Original strand, 20510619 - 20510836
Alignment:
| Q |
34 |
aatagctctatatttggacattcatacaactttatctttttcaatgatttacattgaagagaatgaaccccaacaaagaatgccttaaatttggtcaagt |
133 |
Q |
| |
|
||||||| ||| ||||||||| || |||| || || ||||||||||||| |||||||||||||| |||||||||||||||||||| | ||||||||| | |
|
|
| T |
20510619 |
aatagctttatttttggacatccaaacaaattgattgttttcaatgatttgcattgaagagaatggaccccaacaaagaatgccttcagtttggtcaaat |
20510718 |
T |
|
| Q |
134 |
attcaagtttaatggaagtcaaatgaggaaacacaaatttaaccatctcatctgttccttcttccttgacaacaatttcatcaatcccacagttacttat |
233 |
Q |
| |
|
| |||||||||| | |||||||||||||||||||| |||||||||||||||| ||| ||||||||| |||||||||| | ||||||||| ||| ||| |
|
|
| T |
20510719 |
tatgaagtttaatgaatgtcaaatgaggaaacacaaaattaaccatctcatctggtccatcttccttggcaacaatttcttgaatcccacatttaattac |
20510818 |
T |
|
| Q |
234 |
tcgaagactttgaagttg |
251 |
Q |
| |
|
| |||||||||||||||| |
|
|
| T |
20510819 |
ttgaagactttgaagttg |
20510836 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 46 - 251
Target Start/End: Complemental strand, 13517292 - 13517087
Alignment:
| Q |
46 |
tttggacattcatacaactttatctttttcaatgatttacattgaagagaatgaaccccaacaaagaatgccttaaatttggtcaagtattcaagtttaa |
145 |
Q |
| |
|
||||||||| || |||| | |||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||| | ||| | ||||||| ||| |
|
|
| T |
13517292 |
tttggacatccaaacaaatcgatctttttcaatgatttacattgaagagaatggaccccaacaaagaatgccttaagttttggcaaatgttcaagtataa |
13517193 |
T |
|
| Q |
146 |
tggaagtcaaatgaggaaacacaaatttaaccatctcatctgttccttcttccttgacaacaatttcatcaatcccacagttacttattcgaagactttg |
245 |
Q |
| |
|
|||| || || || ||||||||||||||||| ||||| |||||||| ||||||||| |||||||||| | || ||||| ||||||| |||||||||||| |
|
|
| T |
13517192 |
tggatgttaattgtggaaacacaaatttaactatctcttctgttccatcttccttggcaacaatttcttggatgccacatttacttactcgaagactttg |
13517093 |
T |
|
| Q |
246 |
aagttg |
251 |
Q |
| |
|
|||||| |
|
|
| T |
13517092 |
aagttg |
13517087 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 34 - 251
Target Start/End: Complemental strand, 20377968 - 20377751
Alignment:
| Q |
34 |
aatagctctatatttggacattcatacaactttatctttttcaatgatttacattgaagagaatgaaccccaacaaagaatgccttaaatttggtcaagt |
133 |
Q |
| |
|
||||||||||| ||||||||| || |||| | || ||||||||||||| |||||||||||||| |||||||||||||||||||| | ||||||||| | |
|
|
| T |
20377968 |
aatagctctatttttggacatccaaacaaatgaattgttttcaatgatttgcattgaagagaatggaccccaacaaagaatgccttcagtttggtcaaat |
20377869 |
T |
|
| Q |
134 |
attcaagtttaatggaagtcaaatgaggaaacacaaatttaaccatctcatctgttccttcttccttgacaacaatttcatcaatcccacagttacttat |
233 |
Q |
| |
|
| | |||||||||| | ||||||||||||||||||||||||||||||||||||| ||| |||||| || |||| ||||| | ||||||||| ||| ||| |
|
|
| T |
20377868 |
aatgaagtttaatgaatgtcaaatgaggaaacacaaatttaaccatctcatctggtccatcttccctggcaacgatttcttgaatcccacatttaattac |
20377769 |
T |
|
| Q |
234 |
tcgaagactttgaagttg |
251 |
Q |
| |
|
| ||||| |||||||||| |
|
|
| T |
20377768 |
ttgaagattttgaagttg |
20377751 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 34 - 251
Target Start/End: Original strand, 16453860 - 16454077
Alignment:
| Q |
34 |
aatagctctatatttggacattcatacaactttatctttttcaatgatttacattgaagagaatgaaccccaacaaagaatgccttaaatttggtcaagt |
133 |
Q |
| |
|
||||||||||| ||||||||| || |||| | || ||||||| |||||||||||||| |||||||| ||||||||||||||||| | || | || |
|
|
| T |
16453860 |
aatagctctatttttggacatccaaacaagtaaattgttttcaacgatttacattgaagtgaatgaacaccaacaaagaatgccttcagcttaggtaaaa |
16453959 |
T |
|
| Q |
134 |
attcaagtttaatggaagtcaaatgaggaaacacaaatttaaccatctcatctgttccttcttccttgacaacaatttcatcaatcccacagttacttat |
233 |
Q |
| |
|
||||||| ||||| | || ||||||| ||||||||| || || ||||||| |||||||||||||||| |||||||||| ||||||||||||||||||| |
|
|
| T |
16453960 |
gttcaagtctaatgaatgttaaatgagaaaacacaaagtttactatctcatttgttccttcttccttggcaacaatttcttcaatcccacagttacttac |
16454059 |
T |
|
| Q |
234 |
tcgaagactttgaagttg |
251 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
16454060 |
tcgaagactttgaagttg |
16454077 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 34 - 251
Target Start/End: Original strand, 16463017 - 16463234
Alignment:
| Q |
34 |
aatagctctatatttggacattcatacaactttatctttttcaatgatttacattgaagagaatgaaccccaacaaagaatgccttaaatttggtcaagt |
133 |
Q |
| |
|
||||||||||| ||||||||| || |||| | || ||||||| |||||||||||||| |||||||| ||||||||||||||||| | || | || |
|
|
| T |
16463017 |
aatagctctatttttggacatccaaacaagtaaattgttttcaacgatttacattgaagtgaatgaacaccaacaaagaatgccttcagcttaggtaaaa |
16463116 |
T |
|
| Q |
134 |
attcaagtttaatggaagtcaaatgaggaaacacaaatttaaccatctcatctgttccttcttccttgacaacaatttcatcaatcccacagttacttat |
233 |
Q |
| |
|
||||||| ||||| | || ||||||| ||||||||| || || ||||||| |||||||||||||||| |||||||||| ||||||||||||||||||| |
|
|
| T |
16463117 |
gttcaagtctaatgaatgttaaatgagaaaacacaaagtttactatctcatttgttccttcttccttggcaacaatttcttcaatcccacagttacttac |
16463216 |
T |
|
| Q |
234 |
tcgaagactttgaagttg |
251 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
16463217 |
tcgaagactttgaagttg |
16463234 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 34 - 251
Target Start/End: Complemental strand, 20486485 - 20486268
Alignment:
| Q |
34 |
aatagctctatatttggacattcatacaactttatctttttcaatgatttacattgaagagaatgaaccccaacaaagaatgccttaaatttggtcaagt |
133 |
Q |
| |
|
||||||||||| ||||||||| |||| || | ||| |||||||||||||||| ||||||||||||||||||||| ||||||||| || || ||| | |
|
|
| T |
20486485 |
aatagctctatttttggacatccatagaagtggatcgttttcaatgatttacagtgaagagaatgaaccccaacatagaatgcctcaagttcttgcaaat |
20486386 |
T |
|
| Q |
134 |
attcaagtttaatggaagtcaaatgaggaaacacaaatttaaccatctcatctgttccttcttccttgacaacaatttcatcaatcccacagttacttat |
233 |
Q |
| |
|
|| |||| ||||||| || ||||| |||||||||||||||||||||||| |||||||||||||||| |||||||||| | ||| ||||| | ||||| |
|
|
| T |
20486385 |
tttgaagtgtaatggatgttaaatgctgaaacacaaatttaaccatctcatttgttccttcttccttgccaacaatttcttgaataccacactgacttac |
20486286 |
T |
|
| Q |
234 |
tcgaagactttgaagttg |
251 |
Q |
| |
|
| ||||||||||||||| |
|
|
| T |
20486285 |
tttaagactttgaagttg |
20486268 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 34 - 251
Target Start/End: Original strand, 15895842 - 15896059
Alignment:
| Q |
34 |
aatagctctatatttggacattcatacaactttatctttttcaatgatttacattgaagagaatgaaccccaacaaagaatgccttaaatttggtcaagt |
133 |
Q |
| |
|
||||||||||| || |||||| || |||| | || |||||||||||||||||||||| ||||| ||||| |||||||||||||| | || |||||| |
|
|
| T |
15895842 |
aatagctctattttcggacatccagacaagatgattgttttcaatgatttacattgaagggaatggaccccgacaaagaatgccttcagttgggtcaaac |
15895941 |
T |
|
| Q |
134 |
attcaagtttaatggaagtcaaatgaggaaacacaaatttaaccatctcatctgttccttcttccttgacaacaatttcatcaatcccacagttacttat |
233 |
Q |
| |
|
| |||||| ||||||| || ||||||||||||| ||||| ||| |||||||| ||||||| |||| | |||||||||| | |||| |||| ||||||| |
|
|
| T |
15895942 |
aatcaagtgtaatggatgttaaatgaggaaacataaattgaactatctcatcaattccttcctcctcggcaacaatttcttgaatctcacacttacttac |
15896041 |
T |
|
| Q |
234 |
tcgaagactttgaagttg |
251 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
15896042 |
tcgaagactttgaagttg |
15896059 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #12
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 71 - 218
Target Start/End: Original strand, 16491985 - 16492132
Alignment:
| Q |
71 |
ttttcaatgatttacattgaagagaatgaaccccaacaaagaatgccttaaatttggtcaagtattcaagtttaatggaagtcaaatgaggaaacacaaa |
170 |
Q |
| |
|
|||||| ||| ||||||||||||||||| || ||||||||||||||||||| ||||| || | ||||||| ||||||| || ||||||| ||||||||| |
|
|
| T |
16491985 |
ttttcagtgacttacattgaagagaatgtacaccaacaaagaatgccttaagtttgggtaaatgttcaagtctaatggatgttaaatgagaaaacacaaa |
16492084 |
T |
|
| Q |
171 |
tttaaccatctcatctgttccttcttccttgacaacaatttcatcaat |
218 |
Q |
| |
|
| || |||||||||||||||||||| ||| | |||||||| ||||| |
|
|
| T |
16492085 |
ctgtactatctcatctgttccttcttcattggcgacaatttcttcaat |
16492132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0006 (Bit Score: 142; Significance: 1e-74; HSPs: 5)
Name: scaffold0006
Description:
Target: scaffold0006; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 34 - 251
Target Start/End: Complemental strand, 175258 - 175041
Alignment:
| Q |
34 |
aatagctctatatttggacattcatacaactttatctttttcaatgatttacattgaagagaatgaaccccaacaaagaatgccttaaatttggtcaagt |
133 |
Q |
| |
|
||||||||||| ||||||||| | ||||||| || |||||||||||||||||||||||||||| ||||||||||||||||| |||| ||||||||| | |
|
|
| T |
175258 |
aatagctctattcttggacatttaaacaacttgatggttttcaatgatttacattgaagagaatggaccccaacaaagaatgctttaagtttggtcaaat |
175159 |
T |
|
| Q |
134 |
attcaagtttaatggaagtcaaatgaggaaacacaaatttaaccatctcatctgttccttcttccttgacaacaatttcatcaatcccacagttacttat |
233 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
175158 |
tatcaagttcaatggaagtcaaatgaggaaacacaaatttaaccatctcatctggtccttcttccttgacaacaatttcttcaatcccacagttacttac |
175059 |
T |
|
| Q |
234 |
tcgaagactttgaagttg |
251 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
175058 |
aagaagactttgaagttg |
175041 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0006; HSP #2
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 34 - 251
Target Start/End: Complemental strand, 190666 - 190449
Alignment:
| Q |
34 |
aatagctctatatttggacattcatacaactttatctttttcaatgatttacattgaagagaatgaaccccaacaaagaatgccttaaatttggtcaagt |
133 |
Q |
| |
|
||||||||||| ||||||||| | ||||||| || |||||||||||||||||||||||||||| ||||||||||||||||| |||| ||||||||| | |
|
|
| T |
190666 |
aatagctctattcttggacatttaaacaacttgatggttttcaatgatttacattgaagagaatggaccccaacaaagaatgctttaagtttggtcaaat |
190567 |
T |
|
| Q |
134 |
attcaagtttaatggaagtcaaatgaggaaacacaaatttaaccatctcatctgttccttcttccttgacaacaatttcatcaatcccacagttacttat |
233 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
190566 |
tatcaagttcaatggaagtcaaatgaggaaacacaaatttaaccatctcatctggtccttcttccttgacaacaatttcttcaatcccacagttacttac |
190467 |
T |
|
| Q |
234 |
tcgaagactttgaagttg |
251 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
190466 |
aagaagactttgaagttg |
190449 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0006; HSP #3
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 34 - 251
Target Start/End: Complemental strand, 114085 - 113868
Alignment:
| Q |
34 |
aatagctctatatttggacattcatacaactttatctttttcaatgatttacattgaagagaatgaaccccaacaaagaatgccttaaatttggtcaagt |
133 |
Q |
| |
|
||||||||||| ||||||||| || |||| || || ||||||||||||| |||||||||||||| |||||||||||||||||||||| ||||||||| | |
|
|
| T |
114085 |
aatagctctatttttggacatccaaacaaattaattgttttcaatgatttgcattgaagagaatggaccccaacaaagaatgccttaagtttggtcaaat |
113986 |
T |
|
| Q |
134 |
attcaagtttaatggaagtcaaatgaggaaacacaaatttaaccatctcatctgttccttcttccttgacaacaatttcatcaatcccacagttacttat |
233 |
Q |
| |
|
| |||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| | ||||||||| ||| ||| |
|
|
| T |
113985 |
tattaagtttaatgaatgtcaaatgaggaaacacaaatttaaccatctcatctgttccttcttccttggcaacaatttcttgaatcccacatttaattac |
113886 |
T |
|
| Q |
234 |
tcgaagactttgaagttg |
251 |
Q |
| |
|
| |||||||||||||||| |
|
|
| T |
113885 |
ttgaagactttgaagttg |
113868 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0006; HSP #4
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 34 - 184
Target Start/End: Complemental strand, 3800 - 3650
Alignment:
| Q |
34 |
aatagctctatatttggacattcatacaactttatctttttcaatgatttacattgaagagaatgaaccccaacaaagaatgccttaaatttggtcaagt |
133 |
Q |
| |
|
||||||||||| |||||||| | ||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
3800 |
aatagctctattgttggacatgcgaacaacttgatcgttttcaatgatttacattgaagagaatgaaccccaacaaagaatgccttaagtttggtcaagt |
3701 |
T |
|
| Q |
134 |
attcaagtttaatggaagtcaaatgaggaaacacaaatttaaccatctcat |
184 |
Q |
| |
|
| | ||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3700 |
acttaaggttaatggaagtcaaatgaggaaacacaaatttaaccatctcat |
3650 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0006; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 193 - 251
Target Start/End: Complemental strand, 210831 - 210773
Alignment:
| Q |
193 |
tcttccttgacaacaatttcatcaatcccacagttacttattcgaagactttgaagttg |
251 |
Q |
| |
|
|||||||| |||||||||| ||||||||||||||||||| |||||||||||||||| |
|
|
| T |
210831 |
tcttcctttgcaacaatttcttcaatcccacagttacttacatgaagactttgaagttg |
210773 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0069 (Bit Score: 138; Significance: 3e-72; HSPs: 2)
Name: scaffold0069
Description:
Target: scaffold0069; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 34 - 251
Target Start/End: Complemental strand, 42594 - 42377
Alignment:
| Q |
34 |
aatagctctatatttggacattcatacaactttatctttttcaatgatttacattgaagagaatgaaccccaacaaagaatgccttaaatttggtcaagt |
133 |
Q |
| |
|
||||||||||| |||||||| ||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
42594 |
aatagctctattgttggacatgtgaacaacttgatcgttttcaatgatttacattgaagagaatgaaccccaacaaagaatgccttaagtttggtcaagt |
42495 |
T |
|
| Q |
134 |
attcaagtttaatggaagtcaaatgaggaaacacaaatttaaccatctcatctgttccttcttccttgacaacaatttcatcaatcccacagttacttat |
233 |
Q |
| |
|
| ||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| | |||||||| | ||||||||| | ||||| |
|
|
| T |
42494 |
actcaaggttaatggaagtcaaatgaggaaacacaaatttaaccatctcatatgttccttcttccttggccacaatttcttgaatcccacactgacttac |
42395 |
T |
|
| Q |
234 |
tcgaagactttgaagttg |
251 |
Q |
| |
|
| |||||||||||||||| |
|
|
| T |
42394 |
ttgaagactttgaagttg |
42377 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0069; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 34 - 251
Target Start/End: Complemental strand, 48270 - 48053
Alignment:
| Q |
34 |
aatagctctatatttggacattcatacaactttatctttttcaatgatttacattgaagagaatgaaccccaacaaagaatgccttaaatttggtcaagt |
133 |
Q |
| |
|
||||||||||| ||||||||| || |||| | || ||||||||||||| |||||||||||||| |||||||||||||||||||| | ||||||||| | |
|
|
| T |
48270 |
aatagctctatttttggacatccaaacaaatgaattgttttcaatgatttgcattgaagagaatggaccccaacaaagaatgcctttagtttggtcaaat |
48171 |
T |
|
| Q |
134 |
attcaagtttaatggaagtcaaatgaggaaacacaaatttaaccatctcatctgttccttcttccttgacaacaatttcatcaatcccacagttacttat |
233 |
Q |
| |
|
| |||||||||| | ||||||||||||||||||||||||||||||||||||| ||| |||||| || |||| ||||| | ||||||||| ||| ||| |
|
|
| T |
48170 |
tattaagtttaatgaatgtcaaatgaggaaacacaaatttaaccatctcatctggtccatcttccctggcaacgatttcttgaatcccacatttaattac |
48071 |
T |
|
| Q |
234 |
tcgaagactttgaagttg |
251 |
Q |
| |
|
| ||||| |||||||||| |
|
|
| T |
48070 |
ttgaagattttgaagttg |
48053 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 138; Significance: 3e-72; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 34 - 251
Target Start/End: Original strand, 38052606 - 38052823
Alignment:
| Q |
34 |
aatagctctatatttggacattcatacaactttatctttttcaatgatttacattgaagagaatgaaccccaacaaagaatgccttaaatttggtcaagt |
133 |
Q |
| |
|
||||||||||| ||||||||| | ||||||| ||| ||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||| |
|
|
| T |
38052606 |
aatagctctatttttggacatccgaacaacttgatcattttcaatgatttacattgaagagaatgaactccaacaaagaatgccttaagtttggtcaaga |
38052705 |
T |
|
| Q |
134 |
attcaagtttaatggaagtcaaatgaggaaacacaaatttaaccatctcatctgttccttcttccttgacaacaatttcatcaatcccacagttacttat |
233 |
Q |
| |
|
| | ||||| |||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||| ||||||||||||||||| | |
|
|
| T |
38052706 |
aattaagttcaatggatgtcaaatgaggaaacacaaatttaaccatttcatctgttccttcttccttggcaacaatttcttcaatcccacagttactgac |
38052805 |
T |
|
| Q |
234 |
tcgaagactttgaagttg |
251 |
Q |
| |
|
| |||||| ||||||||| |
|
|
| T |
38052806 |
tagaagacattgaagttg |
38052823 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 34 - 251
Target Start/End: Original strand, 30702658 - 30702872
Alignment:
| Q |
34 |
aatagctctatatttggacattcatacaactttatctttttcaatgatttacattgaagagaatgaaccccaacaaagaatgccttaaatttggtcaagt |
133 |
Q |
| |
|
||||||||||||||||||||| | ||||||||||| |||||||||||||||||||||||||||| ||||||| ||| |||||||||| ||||| ||| | |
|
|
| T |
30702658 |
aatagctctatatttggacatgaaaacaactttatcgttttcaatgatttacattgaagagaatggaccccaagaaaaaatgccttaagtttgggcaaat |
30702757 |
T |
|
| Q |
134 |
attcaagtttaatggaagtcaaatgaggaaacacaaatttaaccatctcatctgttccttcttccttgacaacaatttcatcaatcccacagttacttat |
233 |
Q |
| |
|
||||||| | | ||| || ||| ||||||||||||||||||| ||||| | |||| |||||||| |||||||||| | ||||||||| |||||| |
|
|
| T |
30702758 |
attcaagcgtgagggatgttaaacgaggaaacacaaatttaactatctctttcgttc---cttccttggcaacaatttcttgaatcccacaattacttgc |
30702854 |
T |
|
| Q |
234 |
tcgaagactttgaagttg |
251 |
Q |
| |
|
| |||||||||||||||| |
|
|
| T |
30702855 |
ttgaagactttgaagttg |
30702872 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 71 - 251
Target Start/End: Original strand, 38054841 - 38055021
Alignment:
| Q |
71 |
ttttcaatgatttacattgaagagaatgaaccccaacaaagaatgccttaaatttggtcaagtattcaagtttaatggaagtcaaatgaggaaacacaaa |
170 |
Q |
| |
|
||||||| ||||||||||||||||||||| ||||||||||||||| ||||| ||||| ||| | ||||||| | ||||| || ||||||||||||||||| |
|
|
| T |
38054841 |
ttttcaaagatttacattgaagagaatgagccccaacaaagaatgtcttaagtttgggcaaatcttcaagtgtgatggatgttaaatgaggaaacacaaa |
38054940 |
T |
|
| Q |
171 |
tttaaccatctcatctgttccttcttccttgacaacaatttcatcaatcccacagttacttattcgaagactttgaagttg |
251 |
Q |
| |
|
||||| |||||| ||||||||| |||||| |||| ||||| | ||||||||||||||||| | |||||||||||||| |
|
|
| T |
38054941 |
cttaactatctcacatgttccttcgtccttggcaacgatttcttgaatcccacagttacttactttcagactttgaagttg |
38055021 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 133; Significance: 3e-69; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 71 - 251
Target Start/End: Original strand, 20805914 - 20806094
Alignment:
| Q |
71 |
ttttcaatgatttacattgaagagaatgaaccccaacaaagaatgccttaaatttggtcaagtattcaagtttaatggaagtcaaatgaggaaacacaaa |
170 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||| ||||||||||||||||||||||||||||| |
|
|
| T |
20805914 |
ttttcaatgatttacattgaagagaatgaaccccaacaaagaatgccttaagtttggtcaagtactcaaggttaatggaagtcaaatgaggaaacacaaa |
20806013 |
T |
|
| Q |
171 |
tttaaccatctcatctgttccttcttccttgacaacaatttcatcaatcccacagttacttattcgaagactttgaagttg |
251 |
Q |
| |
|
|||||||||||||| |||||||||||||||| | || ||||| | ||||||||| ||||||| | |||||||||||||||| |
|
|
| T |
20806014 |
tttaaccatctcatatgttccttcttccttggccacgatttcttgaatcccacacttacttacttgaagactttgaagttg |
20806094 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 34 - 257
Target Start/End: Original strand, 20769000 - 20769223
Alignment:
| Q |
34 |
aatagctctatatttggacattcatacaactttatctttttcaatgatttacattgaagagaatgaaccccaacaaagaatgccttaaatttggtcaagt |
133 |
Q |
| |
|
||||||||||| ||||||||| | ||||||| || ||||||||||||||||||||||||||||| ||||| ||||||||||||||| |||||||||| |
|
|
| T |
20769000 |
aatagctctatttttggacatcgaaacaacttgattgttttcaatgatttacattgaagagaatgacccccatcaaagaatgccttaagtttggtcaagc |
20769099 |
T |
|
| Q |
134 |
attcaagtttaatggaagtcaaatgaggaaacacaaatttaaccatctcatctgttccttcttccttgacaacaatttcatcaatcccacagttacttat |
233 |
Q |
| |
|
| | |||| ||||||| || || || ||||||||||||||||| ||||||| |||||||||||||||| |||||||||| | ||||||||| ||||| | |
|
|
| T |
20769100 |
aatgaagtgtaatggatgttaactgcggaaacacaaatttaactatctcatttgttccttcttccttgccaacaatttcttgaatcccacatttactaac |
20769199 |
T |
|
| Q |
234 |
tcgaagactttgaagttgtttcat |
257 |
Q |
| |
|
||||||||||||||| || ||||| |
|
|
| T |
20769200 |
tcgaagactttgaagctgcttcat |
20769223 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 34 - 257
Target Start/End: Original strand, 20778794 - 20779017
Alignment:
| Q |
34 |
aatagctctatatttggacattcatacaactttatctttttcaatgatttacattgaagagaatgaaccccaacaaagaatgccttaaatttggtcaagt |
133 |
Q |
| |
|
||||||||||| ||||||||| | ||||||| || ||||||||||||||||||||||||||||| ||||| ||||||||||||||| |||||||||| |
|
|
| T |
20778794 |
aatagctctatttttggacatcgaaacaacttgattgttttcaatgatttacattgaagagaatgacccccatcaaagaatgccttaagtttggtcaagc |
20778893 |
T |
|
| Q |
134 |
attcaagtttaatggaagtcaaatgaggaaacacaaatttaaccatctcatctgttccttcttccttgacaacaatttcatcaatcccacagttacttat |
233 |
Q |
| |
|
| | |||| ||||||| || || || ||||||||||||||||| ||||||| |||||||||||||||| |||||||||| | ||||||||| ||||| | |
|
|
| T |
20778894 |
aatgaagtgtaatggatgttaactgcggaaacacaaatttaactatctcatttgttccttcttccttgccaacaatttcttgaatcccacatttactaac |
20778993 |
T |
|
| Q |
234 |
tcgaagactttgaagttgtttcat |
257 |
Q |
| |
|
||||||||||||||| || ||||| |
|
|
| T |
20778994 |
tcgaagactttgaagctgcttcat |
20779017 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 34 - 251
Target Start/End: Original strand, 20834789 - 20835006
Alignment:
| Q |
34 |
aatagctctatatttggacattcatacaactttatctttttcaatgatttacattgaagagaatgaaccccaacaaagaatgccttaaatttggtcaa-g |
132 |
Q |
| |
|
||||||||||| ||||||||| || |||| || || ||||||||||||| ||| |||||||||| |||||||||||||||||||||| ||||||||| | |
|
|
| T |
20834789 |
aatagctctatttttggacatccaaacaaattaattgttttcaatgatttgcatcgaagagaatggaccccaacaaagaatgccttaagtttggtcaaag |
20834888 |
T |
|
| Q |
133 |
tattcaagtttaatggaagtcaaatgaggaaacacaaatttaaccatctcatctgttccttcttccttgacaacaatttcatcaatcccacagttactta |
232 |
Q |
| |
|
||| |||||||||| | ||||||||||||||||||||||||||||||||||| | ||| | |||| || |||||||||| | ||||||||| ||| ||| |
|
|
| T |
20834889 |
tatg-aagtttaatgaatgtcaaatgaggaaacacaaatttaaccatctcatccggtccatattccctggcaacaatttcttgaatcccacatttaatta |
20834987 |
T |
|
| Q |
233 |
ttcgaagactttgaagttg |
251 |
Q |
| |
|
| |||||||||||||||| |
|
|
| T |
20834988 |
ctagaagactttgaagttg |
20835006 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 34 - 251
Target Start/End: Original strand, 20771949 - 20772166
Alignment:
| Q |
34 |
aatagctctatatttggacattcatacaactttatctttttcaatgatttacattgaagagaatgaaccccaacaaagaatgccttaaatttggtcaagt |
133 |
Q |
| |
|
||||||||||| ||||||||| | ||||||| || |||||||||||||||||||||||||||| |||||||||||||||||||||| ||| | ||| | |
|
|
| T |
20771949 |
aatagctctatttttggacatcgaaacaacttgattgttttcaatgatttacattgaagagaatggaccccaacaaagaatgccttaagttttggcaaat |
20772048 |
T |
|
| Q |
134 |
attcaagtttaatggaagtcaaatgaggaaacacaaatttaaccatctcatctgttccttcttccttgacaacaatttcatcaatcccacagttacttat |
233 |
Q |
| |
|
|| |||| ||||||| || || || ||||||||||||||||| ||||| |||||||| ||||||||| |||||||||| | || |||| ||||||| |
|
|
| T |
20772049 |
gtttaagtataatggatgttaactgtggaaacacaaatttaactatctcttctgttccatcttccttggcaacaatttcttggatgccacttttacttac |
20772148 |
T |
|
| Q |
234 |
tcgaagactttgaagttg |
251 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
20772149 |
tcgaagactttgaagttg |
20772166 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 34 - 251
Target Start/End: Original strand, 20781743 - 20781960
Alignment:
| Q |
34 |
aatagctctatatttggacattcatacaactttatctttttcaatgatttacattgaagagaatgaaccccaacaaagaatgccttaaatttggtcaagt |
133 |
Q |
| |
|
||||||||||| ||||||||| | ||||||| || |||||||||||||||||||||||||||| |||||||||||||||||||||| ||| | ||| | |
|
|
| T |
20781743 |
aatagctctatttttggacatcgaaacaacttgattgttttcaatgatttacattgaagagaatggaccccaacaaagaatgccttaagttttggcaaat |
20781842 |
T |
|
| Q |
134 |
attcaagtttaatggaagtcaaatgaggaaacacaaatttaaccatctcatctgttccttcttccttgacaacaatttcatcaatcccacagttacttat |
233 |
Q |
| |
|
|| |||| ||||||| || || || ||||||||||||||||| ||||| |||||||| ||||||||| |||||||||| | || |||| ||||||| |
|
|
| T |
20781843 |
gtttaagtataatggatgttaactgtggaaacacaaatttaactatctcttctgttccatcttccttggcaacaatttcttggatgccacttttacttac |
20781942 |
T |
|
| Q |
234 |
tcgaagactttgaagttg |
251 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
20781943 |
tcgaagactttgaagttg |
20781960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 34 - 251
Target Start/End: Original strand, 20841556 - 20841774
Alignment:
| Q |
34 |
aatagctctatatttggacattcatacaactttatctttttcaatgatttacattgaagagaatgaaccccaacaaagaatgccttaaatttggtcaagt |
133 |
Q |
| |
|
||||||||||| ||||||||| | |||| ||||| |||||||||||||||||||||||||||| || |||||||||||||||||| ||||| ||| | |
|
|
| T |
20841556 |
aatagctctatttttggacatccgaacaaatttattgttttcaatgatttacattgaagagaatgggccacaacaaagaatgccttaagtttgggcaaat |
20841655 |
T |
|
| Q |
134 |
attcaagtttaatggaagtcaaatg-aggaaacacaaatttaaccatctcatctgttccttcttccttgacaacaatttcatcaatcccacagttactta |
232 |
Q |
| |
|
||| |||| ||||||| || || || |||||||||||||||||| ||||| | |||| |||| |||| ||||||||| | |||||||||| ||| || |
|
|
| T |
20841656 |
attgaagtataatggatgttaactgcaggaaacacaaatttaactatctcctttgttgcttcctcctctttaacaatttcttgaatcccacagctacgta |
20841755 |
T |
|
| Q |
233 |
ttcgaagactttgaagttg |
251 |
Q |
| |
|
| |||||||||||||||| |
|
|
| T |
20841756 |
ctggaagactttgaagttg |
20841774 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 34 - 251
Target Start/End: Original strand, 20849650 - 20849868
Alignment:
| Q |
34 |
aatagctctatatttggacattcatacaactttatctttttcaatgatttacattgaagagaatgaaccccaacaaagaatgccttaaatttggtcaagt |
133 |
Q |
| |
|
||||||||||| ||||||||| | |||| ||||| |||||||||||||||||||||||||||| || |||||||||||||||||| ||||| ||| | |
|
|
| T |
20849650 |
aatagctctatttttggacatccgaacaaatttattgttttcaatgatttacattgaagagaatgggccacaacaaagaatgccttaagtttgggcaaat |
20849749 |
T |
|
| Q |
134 |
attcaagtttaatggaagtcaaatg-aggaaacacaaatttaaccatctcatctgttccttcttccttgacaacaatttcatcaatcccacagttactta |
232 |
Q |
| |
|
||| |||| ||||||| || || || |||||||||||||||||| ||||| | |||| |||| |||| ||||||||| | |||||||||| ||| || |
|
|
| T |
20849750 |
attgaagtataatggatgttaactgcaggaaacacaaatttaactatctcctttgttgcttcctcctctttaacaatttcttgaatcccacagctacgta |
20849849 |
T |
|
| Q |
233 |
ttcgaagactttgaagttg |
251 |
Q |
| |
|
| |||||||||||||||| |
|
|
| T |
20849850 |
ctggaagactttgaagttg |
20849868 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0068 (Bit Score: 130; Significance: 2e-67; HSPs: 1)
Name: scaffold0068
Description:
Target: scaffold0068; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 34 - 251
Target Start/End: Original strand, 32466 - 32683
Alignment:
| Q |
34 |
aatagctctatatttggacattcatacaactttatctttttcaatgatttacattgaagagaatgaaccccaacaaagaatgccttaaatttggtcaagt |
133 |
Q |
| |
|
||||||||||| |||||||| ||||| | ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
32466 |
aatagctctattgttggacatgtgaacaacatgatcgttttcaatgatttacattgaagagaatgaaccccaacaaagaatgccttaagtttggtcaagt |
32565 |
T |
|
| Q |
134 |
attcaagtttaatggaagtcaaatgaggaaacacaaatttaaccatctcatctgttccttcttccttgacaacaatttcatcaatcccacagttacttat |
233 |
Q |
| |
|
| ||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| | |||||||| ||||||||| | ||||| |
|
|
| T |
32566 |
actcaaggttaatggaagtcaaatgaggaaacacaaatttaaccatctcatatgttccttcttccttggccacaatttctagaatcccacactgacttac |
32665 |
T |
|
| Q |
234 |
tcgaagactttgaagttg |
251 |
Q |
| |
|
| |||||||||||||||| |
|
|
| T |
32666 |
ttgaagactttgaagttg |
32683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 124; Significance: 7e-64; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 34 - 257
Target Start/End: Complemental strand, 21817170 - 21816947
Alignment:
| Q |
34 |
aatagctctatatttggacattcatacaactttatctttttcaatgatttacattgaagagaatgaaccccaacaaagaatgccttaaatttggtcaagt |
133 |
Q |
| |
|
|||||| |||| ||||||||| | |||| || || ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | |
|
|
| T |
21817170 |
aatagcactatttttggacatcgaaacaagttgattgttttcaatgatttacattgaagagaatgaaccccaacaaagaatgccttaagtttggtcaaat |
21817071 |
T |
|
| Q |
134 |
attcaagtttaatggaagtcaaatgaggaaacacaaatttaaccatctcatctgttccttcttccttgacaacaatttcatcaatcccacagttacttat |
233 |
Q |
| |
|
| |||||||||||| || |||||| ||||||||||||||||||||||||||| ||||||||||||| | |||||||| ||||||||||| ||||||| |
|
|
| T |
21817070 |
cataaagtttaatggatgttaaatgaagaaacacaaatttaaccatctcatctggtccttcttccttggccacaatttcttcaatcccacatttacttac |
21816971 |
T |
|
| Q |
234 |
tcgaagactttgaagttgtttcat |
257 |
Q |
| |
|
| |||||||||||||||| ||||| |
|
|
| T |
21816970 |
ttgaagactttgaagttgcttcat |
21816947 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 37 - 247
Target Start/End: Original strand, 22273503 - 22273713
Alignment:
| Q |
37 |
agctctatatttggacattcatacaactttatctttttcaatgatttacattgaagagaatgaaccccaacaaagaatgccttaaatttggtcaagtatt |
136 |
Q |
| |
|
|||||||||||||||||| || | | | ||| |||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||| || | |
|
|
| T |
22273503 |
agctctatatttggacatgcaaagagatcgatcgttttcaatgatttacattgaagagaatggaccccaacaaagaatgccttaagtttggtcaaataat |
22273602 |
T |
|
| Q |
137 |
caagtttaatggaagtcaaatgaggaaacacaaatttaaccatctcatctgttccttcttccttgacaacaatttcatcaatcccacagttacttattcg |
236 |
Q |
| |
|
|||| | ||||| || ||||||||||||||||||||||| |||||||||||||| ||||||||| |||||||||| | || || || ||||||| ||| |
|
|
| T |
22273603 |
taagtgtgatggatgttaaatgaggaaacacaaatttaactatctcatctgttccatcttccttggcaacaatttcttggatgccgcatttacttactcg |
22273702 |
T |
|
| Q |
237 |
aagactttgaa |
247 |
Q |
| |
|
||||||||||| |
|
|
| T |
22273703 |
aagactttgaa |
22273713 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0012 (Bit Score: 106; Significance: 4e-53; HSPs: 1)
Name: scaffold0012
Description:
Target: scaffold0012; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 34 - 251
Target Start/End: Complemental strand, 120856 - 120639
Alignment:
| Q |
34 |
aatagctctatatttggacattcatacaactttatctttttcaatgatttacattgaagagaatgaaccccaacaaagaatgccttaaatttggtcaagt |
133 |
Q |
| |
|
|||| |||||| ||||||||| | |||| || || | |||||||||||| |||||||||||||| |||||||||||||||||||||| | ||||||| | |
|
|
| T |
120856 |
aataactctattcttggacatttaaacaaattaatttctttcaatgatttgcattgaagagaatggaccccaacaaagaatgccttaagtctggtcaaat |
120757 |
T |
|
| Q |
134 |
attcaagtttaatggaagtcaaatgaggaaacacaaatttaaccatctcatctgttccttcttccttgacaacaatttcatcaatcccacagttacttat |
233 |
Q |
| |
|
| ||||| ||||||||| |||||||||||||||||||||| ||||||||||||||||||||||| |||||||||| ||||||||||||||||||| |
|
|
| T |
120756 |
tataaagttcaatggaagttcaatgaggaaacacaaatttaactatctcatctgttccttcttcctttgcaacaatttcttcaatcccacagttacttac |
120657 |
T |
|
| Q |
234 |
tcgaagactttgaagttg |
251 |
Q |
| |
|
|||| ||||||||||| |
|
|
| T |
120656 |
atgaagtctttgaagttg |
120639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0460 (Bit Score: 102; Significance: 1e-50; HSPs: 2)
Name: scaffold0460
Description:
Target: scaffold0460; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 34 - 251
Target Start/End: Complemental strand, 12039 - 11822
Alignment:
| Q |
34 |
aatagctctatatttggacattcatacaactttatctttttcaatgatttacattgaagagaatgaaccccaacaaagaatgccttaaatttggtcaagt |
133 |
Q |
| |
|
||||||| ||| ||||||||| |||| || || ||| |||||||||||||||| ||||||||||||||||||||| ||||||||| || || ||| | |
|
|
| T |
12039 |
aatagctgtatttttggacatccatagaagttgatcgttttcaatgatttacagtgaagagaatgaaccccaacatagaatgcctcaagttcttgcaaat |
11940 |
T |
|
| Q |
134 |
attcaagtttaatggaagtcaaatgaggaaacacaaatttaaccatctcatctgttccttcttccttgacaacaatttcatcaatcccacagttacttat |
233 |
Q |
| |
|
| |||||||||| | |||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||| | ||||||||| | ||||| |
|
|
| T |
11939 |
ttagaagtttaatgaatgtcaaatgaggaaacacaaatttaaccatctcatttgttccttcttccttgccaacaatttcttgaatcccacactgacttac |
11840 |
T |
|
| Q |
234 |
tcgaagactttgaagttg |
251 |
Q |
| |
|
| |||||||||||||||| |
|
|
| T |
11839 |
ttgaagactttgaagttg |
11822 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0460; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 34 - 251
Target Start/End: Complemental strand, 7474 - 7257
Alignment:
| Q |
34 |
aatagctctatatttggacattcatacaactttatctttttcaatgatttacattgaagagaatgaaccccaacaaagaatgccttaaatttggtcaagt |
133 |
Q |
| |
|
||||||||||| ||||||||| |||| || | ||| |||||||||||||||| ||||||||||||||||||||| ||||||||| || || ||| | |
|
|
| T |
7474 |
aatagctctatttttggacatccatagaagtggatcgttttcaatgatttacagtgaagagaatgaaccccaacatagaatgcctcaagttcttgcaaat |
7375 |
T |
|
| Q |
134 |
attcaagtttaatggaagtcaaatgaggaaacacaaatttaaccatctcatctgttccttcttccttgacaacaatttcatcaatcccacagttacttat |
233 |
Q |
| |
|
|| |||| ||||||| || ||||| |||||||||||||||||||||||| |||||||||||||||| |||||||||| | ||| ||||| | ||||| |
|
|
| T |
7374 |
tttgaagtgtaatggatgttaaatgctgaaacacaaatttaaccatctcatttgttccttcttccttgccaacaatttcttgaataccacactgacttac |
7275 |
T |
|
| Q |
234 |
tcgaagactttgaagttg |
251 |
Q |
| |
|
| ||||||||||||||| |
|
|
| T |
7274 |
tttaagactttgaagttg |
7257 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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