View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3037-Insertion-2 (Length: 975)
Name: NF3037-Insertion-2
Description: NF3037
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3037-Insertion-2 |
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Alignment Details
Target: chr8 (Bit Score: 371; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 256 - 823
Target Start/End: Original strand, 7948815 - 7949385
Alignment:
| Q |
256 |
aaaacttaccataaggtccttaaagagtgtctcggggacactcatttgcattttactggtcttactaacgaatgccaagaaa---gtggtgatggggtga |
352 |
Q |
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| T |
7948815 |
aaaacttaccataagatccttaaagagtgtttcggggacactcatttgaatttttctgatcttactaacgaatgccgagaaataagtggtgatggggtga |
7948914 |
T |
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| Q |
353 |
ggcgacttggctctcaagtttgtttaaaannnnnnnnnnnnnaatttattttgctagtgaattgaatttgttttgtttgttaaaaaacacttataccatt |
452 |
Q |
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| T |
7948915 |
ggcgacttggctctcaagtttgtttaaaatttttttttttttaatttattttgctagtgaattgaatttgttttgtttgttaaaaaatacttataccatt |
7949014 |
T |
|
| Q |
453 |
ttgagattatgttgatttaattaaacttattctattttgaggttattgttgaggaactaatttattttcaaaatattatatgtaagtatagatt-ggggc |
551 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
7949015 |
ttgagattatgttgatttaattaaacttattctattttgaggttattgttgaacaactaatttattttcaaaatattatatgtaagtatagattaggggc |
7949114 |
T |
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| Q |
552 |
attaacgaaatcatatttagttcacacatttaatttagtggaaaaagtttaaccttataatctcgatgtattaagttaaaatattctctgggccggttgt |
651 |
Q |
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| T |
7949115 |
attaacaaaatcatatttagttcacacatttaatttagtggaaaaagtttaaccttataatcttgatatattaagttaaaatattctctgagccggttgt |
7949214 |
T |
|
| Q |
652 |
aaaacgtctattaatcccatttcaattactaaaaataaatttcccttttttgattt-nnnnnnnnnnnttggttttgttatttgacggcgagtgcaaatg |
750 |
Q |
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| T |
7949215 |
aaaacgactattaattccacttgaattactaaaaataaattccccttttctgatttaaaaaaaaaaaattggttttgttatttgacggcgagtgcaaatg |
7949314 |
T |
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| Q |
751 |
tatatttatgttgttgatgtcatttccttataaaattcatgatgggtttggttgttgggtgttattcttcttt |
823 |
Q |
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| T |
7949315 |
aatatttatgttgttgatgtcatttctttataaaattcatgatggg-ttggttgtt-ggtgttattcttcttt |
7949385 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 8 - 90
Target Start/End: Original strand, 7948564 - 7948646
Alignment:
| Q |
8 |
ataagatcatcacggtaataccatattcattctcccttcnnnnnnntacaacattaattctgaaactaatcttgggcataaca |
90 |
Q |
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| T |
7948564 |
ataagatcatcacggtaatatcatattcattctcccttcaaaaaaatacaacattaattctcaaactaatcttgggcataaca |
7948646 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 924 - 973
Target Start/End: Complemental strand, 11657943 - 11657894
Alignment:
| Q |
924 |
aaatatgattgtcaaataagttgtcacccaaatggatgttccaataacat |
973 |
Q |
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| T |
11657943 |
aaatatgattgtcaaataagttgtcagcaaattggttgttcaaataacat |
11657894 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000006; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 924 - 972
Target Start/End: Original strand, 34504149 - 34504197
Alignment:
| Q |
924 |
aaatatgattgtcaaataagttgtcacccaaatggatgttccaataaca |
972 |
Q |
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| T |
34504149 |
aaatatgattgtcaaataagttgtcaccaaattggttgttcaaataaca |
34504197 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 918 - 972
Target Start/End: Complemental strand, 14986693 - 14986638
Alignment:
| Q |
918 |
ctttgtaaa-tatgattgtcaaataagttgtcacccaaatggatgttccaataaca |
972 |
Q |
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| T |
14986693 |
ctttgtaaagtatgattgtcaaataagttgtcaccaaattggttgttcaaataaca |
14986638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 918 - 972
Target Start/End: Complemental strand, 35098954 - 35098899
Alignment:
| Q |
918 |
ctttgtaaat-atgattgtcaaataagttgtcacccaaatggatgttccaataaca |
972 |
Q |
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| T |
35098954 |
ctttgtaaattatgattgtcaaataagttgtcaccaaattggttgttcaaataaca |
35098899 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 918 - 972
Target Start/End: Original strand, 36494573 - 36494628
Alignment:
| Q |
918 |
ctttgtaaat-atgattgtcaaataagttgtcacccaaatggatgttccaataaca |
972 |
Q |
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| T |
36494573 |
ctttgtaaattatgattgtcaaataagttgtcaccaaattggttgttcaaataaca |
36494628 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 924 - 973
Target Start/End: Complemental strand, 3024692 - 3024643
Alignment:
| Q |
924 |
aaatatgattgtcaaataagttgtcacccaaatggatgttccaataacat |
973 |
Q |
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|||||||||||||||||||||||||||| || | | ||||| |||||||| |
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| T |
3024692 |
aaatatgattgtcaaataagttgtcaccaaattagttgttcaaataacat |
3024643 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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