View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3037-Insertion-3 (Length: 795)
Name: NF3037-Insertion-3
Description: NF3037
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3037-Insertion-3 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 726; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 726; E-Value: 0
Query Start/End: Original strand, 8 - 795
Target Start/End: Original strand, 4212910 - 4213702
Alignment:
| Q |
8 |
atatgtatcatttcttgttgagaaccaagttaaatttatgaccggaacaattcttttcttgattaagctagttttgattattacggagatttagaagaat |
107 |
Q |
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| T |
4212910 |
atatgtatcatttcttgttgagaaccaagttaaatttatgaccggaacaattcttttcttgattaagctagttttgattattacggagatttagaagaat |
4213009 |
T |
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| Q |
108 |
taggttaatgaaatcattgtattttttggaataattcattgattacaattttacaagaactagttttacaattgtgttgaattaatgattgtaggtttat |
207 |
Q |
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| T |
4213010 |
taggttaatgaaatcattgaattttttggaataattcattgattacaattt-acgagaactagttttacaattgtgttgaattaatgattgtaggtttat |
4213108 |
T |
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| Q |
208 |
ttgaccttgtgttttgctgtggccgctgctgctgttggagcttacctccatgtccttctcaacattggtggtattcttacggcaattgcgtgcttgggaa |
307 |
Q |
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| T |
4213109 |
ttgaccttgtgttttgctgtggccgctgctgctgttggagcttacctccatgtccttctcaacattggtggtattcttaccgcaattgcgtgcttgggaa |
4213208 |
T |
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| Q |
308 |
ttagtgtttggttactctcaacacctccttttgaagaggtatgaatttctgttcctttttgtagctttttgttctttttatggtttcgcggtttcaattg |
407 |
Q |
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| T |
4213209 |
ttagtgtttggttactctcaacacctccttttgaagaggtatgaatttctgttcctttttgtagctttttgttctttttatggtttcgcggtttcaattg |
4213308 |
T |
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| Q |
408 |
ttaattattactaacctgtttgtttctttttatggtatacagcgaaagaggttgactttgttgatggccgcggcactgtttcagggtgcctctattggac |
507 |
Q |
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| T |
4213309 |
ttaattattactaacctgtttgtttctttttatggtatacagcgaaagaggttgactttgttgatggccgcggcactgtttcagggtgcctctattggac |
4213408 |
T |
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| Q |
508 |
ccttgattgatttcgctattcaagtcgatccaaggtatgctttcattatatttgtggtttgctgatgcattgggatctttggnnnnnnngtggcaaagtt |
607 |
Q |
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| T |
4213409 |
ccttgattgatttcgctattcaagtcgatccaaggtatgctttcattatatttgtggtttgctgatgcattgggatctttgttttttttgtggcaaagtt |
4213508 |
T |
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| Q |
608 |
tgataatgtggtcattgaatcacataagggattcctatattcatgtag------tatatatataatattcatacgtgtattatgctaaattgctaattgt |
701 |
Q |
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| T |
4213509 |
tgataatgtggtcattgaatcacataagggattcctatattcatgtagtgtatatatatatataatattcatacgtgtattatgctaaattgctaattgt |
4213608 |
T |
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| Q |
702 |
tttgtggtctcatatttgtgtgaagccaaccaagtggcggatggcttagctaatatcggcttgtctcttgttaggtccactagaatgttctatt |
795 |
Q |
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| T |
4213609 |
tttgtggtctcatatttgtgtgaagccaaccaagtggcggatggcttagctaatatcggcttgtctcttgttaggtccactagaatgttctatt |
4213702 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 118; Significance: 9e-60; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 118; E-Value: 9e-60
Query Start/End: Original strand, 200 - 345
Target Start/End: Complemental strand, 31161477 - 31161332
Alignment:
| Q |
200 |
aggtttatttgaccttgtgttttgctgtggccgctgctgctgttggagcttacctccatgtccttctcaacattggtggtattcttacggcaattgcgtg |
299 |
Q |
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| T |
31161477 |
aggtttatttgaccttgtgttttgttgtagtcgctgctgctattggagcttacctccatgtccttctcaacattggtggtattcttaccacaattgcgtg |
31161378 |
T |
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| Q |
300 |
cttgggaattagtgtttggttactctcaacacctccttttgaagag |
345 |
Q |
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| T |
31161377 |
cttgggaattagtgtttggttactctcaacacctccttctgaagag |
31161332 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 448 - 540
Target Start/End: Complemental strand, 31161333 - 31161241
Alignment:
| Q |
448 |
agcgaaagaggttgactttgttgatggccgcggcactgtttcagggtgcctctattggacccttgattgatttcgctattcaagtcgatccaa |
540 |
Q |
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| T |
31161333 |
agcgaatgaggttgactttgttgatggccgcgacactgtttcagggtgcctctgttggacccttgattgatttctctattcaagtcgatccaa |
31161241 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 49; Significance: 1e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 455 - 527
Target Start/End: Complemental strand, 41278220 - 41278148
Alignment:
| Q |
455 |
gaggttgactttgttgatggccgcggcactgtttcagggtgcctctattggacccttgattgatttcgctatt |
527 |
Q |
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| T |
41278220 |
gaggttgtctttgttgatggcttcggctttgtttcagggtgcctctattggacccttgattgatttggctatt |
41278148 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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